CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92440
KRH34357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26990.1	KRG92440	AT3G22960.1	21798944
AT3G26990.1	KRH34357	AT3G22960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06897	Soybean	nucleus	92.72	92.19
VIT_14s0068g01560.t01	Wine grape	cytosol	59.0	58.78
GSMUA_Achr8P17800_001	Banana	cytosol	22.03	56.65
GSMUA_Achr4P15940_001	Banana	cytosol	20.88	53.96
PGSC0003DMT400052044	Potato	nucleus	50.96	52.36
Solyc02g094360.2.1	Tomato	nucleus	51.53	51.93
CDY13671	Canola	nucleus	48.28	49.61
Bra025240.1-P	Field mustard	nucleus	47.7	49.31
Bra039100.1-P	Field mustard	nucleus, plastid	42.91	48.91
CDY20069	Canola	nucleus, plastid	42.72	48.37
AT3G26990.1	Thale cress	nucleus	47.51	48.34
GSMUA_Achr11P...	Banana	nucleus	45.98	46.07
GSMUA_Achr10P...	Banana	nucleus	45.4	45.32
CDY52407	Canola	plastid	48.08	43.05
CDY00175	Canola	mitochondrion	42.91	42.34
HORVU3Hr1G095600.3	Barley	extracellular	11.11	39.46
KRG97617	Soybean	mitochondrion	24.52	39.02
KRH64929	Soybean	nucleus	36.4	36.33
KRG94958	Soybean	nucleus	35.82	35.48
KRH43251	Soybean	nucleus	34.29	35.17
KRH59408	Soybean	nucleus	31.23	33.75
KRH57843	Soybean	mitochondrion	33.91	33.59
Os01t0925000-02	Rice	nucleus	28.93	30.82
KRH31254	Soybean	nucleus	32.57	30.8
TraesCS3D01G429500.1	Wheat	nucleus	26.63	30.28
TraesCS3A01G437300.1	Wheat	nucleus	27.01	29.94
EES04124	Sorghum	nucleus	27.97	28.91
TraesCS3B01G471400.1	Wheat	endoplasmic reticulum	27.59	28.69
Zm00001d011975_P002	Maize	nucleus	27.78	28.43
HORVU3Hr1G095520.4	Barley	cytosol, nucleus	16.86	23.91
Zm00001d042291_P002	Maize	mitochondrion, nucleus	18.01	21.22

Protein Annotations

EMBL:ACUP02011994	EnsemblPlants:KRG94593	EnsemblPlantsGene:GLYMA_19G096700	EntrezGene:100806108	Gene3D:1.25.40.90	InterPro:CID_dom
InterPro:ENTH_VHS	InterPro:IPR006569	InterPro:IPR008942	InterPro:RNA_pol_II-bd	PANTHER:PTHR12460	PANTHER:PTHR12460:SF9
PFAM:PF04818	PFscan:PS51391	ProteinID:KRG94593	ProteinID:KRG94593.1	SEG:seg	SMART:SM00582
SUPFAM:SSF48464	UniParc:UPI00023D88AD	UniProt:I1N7V7	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr19:-:34063104..34077941

Molecular Weight (calculated)

57192.3 Da

IEP (calculated)

6.360

GRAVY (calculated)

-0.516

Length

522 amino acids

Sequence
(BLAST)

001: MGSTFNPQIL VEKLAKLNVS QTSIETLSHW CIFHMNKAKQ VVETWDRQFH SSSREKRLAF LYLANDILQN SRRKGSEFVG EFWKVLPEAL RDVIQNGDDF
101: ARNAALRLIG IWEERKVFGS RGQILKEEFV GSHVENNSRD VKPTNMKLRP SVGNALEKIA SGFHVVYGGQ TDEDAVLSKC RNAINCLDKA EKEIVSGQFG
201: GSALVDELQG HNAILKDCIE QLTAIESSRT SLVSLLREAL EDQEFKLGQV RSQIQAAHVQ SERATNTCQQ LLNVNNIPSL AEQSSKEIQT SMTPASFNIS
301: SEREQSAPLM YTPQVSFSQK SGHIEEDPRK SAAAAVAAKL TASTSSAQML SYVLSSLASE GVIGNPMKES SADYHSEKRT KLENDQPSFV PSQNPQQPLP
401: PFPLSESIQH NPPTTNQQST PNEPPPPPSS SPPPLPPPPP PPMSQYPVPQ FMQTAGSISS MAYSYGVTQQ PSIAAYPGVG PSLNSVSTFT PPPMGTYQGF
501: QGSDGNYYNQ PSSMPMAPIS RQ

Best Arabidopsis Sequence Match ( AT3G26990.1 )
(BLAST)

001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ

Arabidopsis Description

At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.