Factsheet for Zm00001d011975_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018961_P002
Zm00001d034443_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26990.1	Zm00001d018961_P002	AT3G22960.1	21798944
AT3G26990.1	Zm00001d034443_P001	AT3G22960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04124	Sorghum	nucleus	72.75	73.47
Zm00001d042291_P002	Maize	mitochondrion, nucleus	56.27	64.79
HORVU3Hr1G095600.3	Barley	extracellular	15.29	53.06
Os01t0925000-02	Rice	nucleus	49.22	51.22
TraesCS3A01G437300.1	Wheat	nucleus	47.06	50.96
TraesCS3D01G429500.1	Wheat	nucleus	45.1	50.11
TraesCS3B01G471400.1	Wheat	endoplasmic reticulum	46.08	46.81
GSMUA_Achr8P17800_001	Banana	cytosol	18.43	46.31
GSMUA_Achr4P15940_001	Banana	cytosol	17.65	44.55
HORVU3Hr1G095520.4	Barley	cytosol, nucleus	31.76	44.02
Bra039100.1-P	Field mustard	nucleus, plastid	25.29	28.17
VIT_14s0068g01560.t01	Wine grape	cytosol	28.82	28.05
KRG94593	Soybean	nucleus	28.43	27.78
CDY20069	Canola	nucleus, plastid	25.1	27.77
KRH06897	Soybean	nucleus	28.04	27.24
PGSC0003DMT400052044	Potato	nucleus	27.06	27.17
Solyc02g094360.2.1	Tomato	nucleus	27.06	26.64
AT3G26990.1	Thale cress	nucleus	26.27	26.12
VIT_17s0000g00860.t01	Wine grape	nucleus	27.25	25.93
CDY13671	Canola	nucleus	25.69	25.79
CDY00175	Canola	mitochondrion	25.69	24.76
Bra025240.1-P	Field mustard	nucleus	24.51	24.75
Zm00001d002140_P001	Maize	cytosol, endoplasmic reticulum, nucleus	25.29	22.43
CDY52407	Canola	plastid	25.29	22.13
Zm00001d044657_P002	Maize	nucleus	23.53	20.48
Zm00001d023272_P009	Maize	nucleus	24.12	20.33
Zm00001d052407_P004	Maize	nucleus	24.51	20.19
Zm00001d005013_P001	Maize	nucleus, plastid	13.53	15.54
Zm00001d005012_P002	Maize	nucleus, plastid	12.75	15.37

Protein Annotations

EnsemblPlants:Zm00001d011975_P002	EnsemblPlants:Zm00001d011975_T002	EnsemblPlantsGene:Zm00001d011975	EntrezGene:100273784	Gene3D:1.25.40.90	InterPro:CID_dom
InterPro:ENTH_VHS	InterPro:IPR006569	InterPro:IPR008942	InterPro:RNA_pol_II-bd	ncoils:Coil	PANTHER:PTHR12460
PANTHER:PTHR12460:SF9	PFAM:PF04818	PFscan:PS51391	ProteinID:AQK98429.1	SEG:seg	SMART:SM00582
SUPFAM:SSF48464	UniParc:UPI0008448347	UniProt:A0A1D6G566	MapMan:35.2	:	:

Description

GRMZM2G147226ENTH/VHS family protein

Coordinates

chr8:+:165490510..165506030

Molecular Weight (calculated)

56647.4 Da

IEP (calculated)

8.759

GRAVY (calculated)

-0.621

Length

510 amino acids

Sequence
(BLAST)

001: MSAGFDKQIL AQKLSKLNSS QQTIETLSHW CVFHHRCCQQ VVETWDSEFH AAPVERRVSL LYLANDIMQN SRKEGNGYIA EFMRVIPAAL NGVLTVRDDF
101: GRNVPKRLID IWEDRKIFDT QAQSLKDDFF RRLKDIRNQL KNTGSEQLEK VVSSYKHVLN APMDEDTLMR KCQAALINFD ELNKTYGNNS ILGSSNRSGF
201: MQELQEQHSI LRNSIEQLKV SESLRATLIF HLKEALNEQE LKVEHLRSQL QAAQPRFKRA SELCVGLGSN MERRQPSNQG LKRSSLSDPL STVAPEAVKS
301: LQKGQSSAVL YSQEGNGVEH SVTETKLAAG AASDDIRGGA LSSRVNGGNT MLKIEEHTSG NKRQKLEDDA HISQPRSESP PPPPPPFPHP DTFQPPPPPP
401: EYPRSPDPSP PPPRTSLPPH IIPPPPPPPP AMPLHMFSHL PPPAGTFVPF PAGPPGPMYC TYPSFTPVVN FPMTSPPGFR NLTPPPSFRG LAGTFYGPRF
501: PTAPPPADRK

Best Arabidopsis Sequence Match ( AT3G26990.1 )
(BLAST)

001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ

Arabidopsis Description

At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.