Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G240200.1 | |
| TraesCS2B01G257800.1 | |
| TraesCS2D01G237900.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G26990.1 | TraesCS2A01G240200.1 | AT3G22960.1 | 21798944 |
| AT3G26990.1 | TraesCS2B01G257800.1 | AT3G22960.1 | 21798944 |
| AT3G26990.1 | TraesCS2D01G237900.1 | AT3G22960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G437300.1 | Wheat | nucleus | 93.46 | 91.08 |
| TraesCS3B01G471400.1 | Wheat | endoplasmic reticulum | 93.68 | 85.66 |
| HORVU3Hr1G095600.3 | Barley | extracellular | 23.09 | 72.11 |
| Os01t0925000-02 | Rice | nucleus | 55.12 | 51.63 |
| Zm00001d011975_P002 | Maize | nucleus | 50.11 | 45.1 |
| GSMUA_Achr4P15940_001 | Banana | cytosol | 19.83 | 45.05 |
| GSMUA_Achr8P17800_001 | Banana | cytosol | 19.83 | 44.83 |
| EES04124 | Sorghum | nucleus | 48.8 | 44.36 |
| Zm00001d042291_P002 | Maize | mitochondrion, nucleus | 35.51 | 36.79 |
| VIT_14s0068g01560.t01 | Wine grape | cytosol | 30.72 | 26.91 |
| VIT_17s0000g00860.t01 | Wine grape | nucleus | 31.15 | 26.68 |
| Bra039100.1-P | Field mustard | nucleus, plastid | 26.58 | 26.64 |
| KRG94593 | Soybean | nucleus | 30.28 | 26.63 |
| CDY20069 | Canola | nucleus, plastid | 26.58 | 26.46 |
| PGSC0003DMT400052044 | Potato | nucleus | 28.54 | 25.79 |
| AT3G26990.1 | Thale cress | nucleus | 28.76 | 25.73 |
| KRH06897 | Soybean | nucleus | 28.98 | 25.33 |
| Solyc02g094360.2.1 | Tomato | nucleus | 28.1 | 24.9 |
| CDY13671 | Canola | nucleus | 27.45 | 24.8 |
| Bra025240.1-P | Field mustard | nucleus | 26.8 | 24.36 |
| CDY00175 | Canola | mitochondrion | 27.23 | 23.63 |
| CDY52407 | Canola | plastid | 27.67 | 21.78 |
| TraesCS5D01G113800.2 | Wheat | nucleus | 24.18 | 21.68 |
| TraesCS5D01G150900.1 | Wheat | nucleus | 23.31 | 18.07 |
| TraesCS4D01G124400.1 | Wheat | nucleus | 22.88 | 18.07 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G429500.1 | EnsemblPlantsGene:TraesCS3D01G429500 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 |
| InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 | PFAM:PF04818 | PFscan:PS51391 |
| SEG:seg | SMART:SM00582 | SUPFAM:SSF48464 | TIGR:cd03562 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr3D:-:544060812..544070115
Molecular Weight (calculated)
51252.1 Da
IEP (calculated)
7.691
GRAVY (calculated)
-0.634
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTGFSAEIF VQKLAKLNIA QQSIETLSHW CIFHHRCCQE VVAIWNKDFH SAPQERKISL LYLANDIMQN SKKDGMRYIH EFLKVIAAAL DDLFTNGDDF
101: GRNVVKRLVD IWEDRKLFGT QGQLLKEEYT RKFKELKSKK PGGELVEKVI SSYKHMLRAP VDEAKLMREC NSALSFVDNL NKEYGNSYLG SSNGYSFVEE
201: LKEQHSILRN TIERFKMSES LRATLVSDLK EALHEQSNRN ALQRKHINAA QVRYRKADDL CQKLGIDVPR HEPSNGVSAN ANSVEKGRST AVMYSREGDG
301: GEPETLNGGF SSRATRDNFE QKIEGHPPVT KRQKIENGIS VPQPEAPPPP PPLPYPDTFE HPPPPPQYPP SPESSPPPLP PSMPPPIPPP PPPSTDAFMP
401: VPALPMGGMP YFPPFPPPVN YPMINMPPPF PGAPNPPHPG FLGFGGPFYG PPFPSAPHQ
101: GRNVVKRLVD IWEDRKLFGT QGQLLKEEYT RKFKELKSKK PGGELVEKVI SSYKHMLRAP VDEAKLMREC NSALSFVDNL NKEYGNSYLG SSNGYSFVEE
201: LKEQHSILRN TIERFKMSES LRATLVSDLK EALHEQSNRN ALQRKHINAA QVRYRKADDL CQKLGIDVPR HEPSNGVSAN ANSVEKGRST AVMYSREGDG
301: GEPETLNGGF SSRATRDNFE QKIEGHPPVT KRQKIENGIS VPQPEAPPPP PPLPYPDTFE HPPPPPQYPP SPESSPPPLP PSMPPPIPPP PPPSTDAFMP
401: VPALPMGGMP YFPPFPPPVN YPMINMPPPF PGAPNPPHPG FLGFGGPFYG PPFPSAPHQ
001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
Arabidopsis Description
At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.