Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G141400.1 | Wheat | nucleus | 92.23 | 91.92 |
| TraesCS5B01G139700.1 | Wheat | nucleus | 90.54 | 90.24 |
| HORVU0Hr1G010590.1 | Barley | cytosol | 89.53 | 84.26 |
| TraesCS4D01G124400.1 | Wheat | nucleus | 67.4 | 68.67 |
| Os12t0126800-01 | Rice | nucleus | 66.55 | 67.35 |
| Os11t0130100-01 | Rice | cytosol, nucleus | 52.87 | 66.6 |
| Zm00001d044657_P002 | Maize | nucleus | 63.51 | 64.16 |
| EES16544 | Sorghum | nucleus | 63.01 | 63.33 |
| Zm00001d005012_P002 | Maize | nucleus, plastid | 43.41 | 60.76 |
| Zm00001d005013_P001 | Maize | nucleus, plastid | 45.44 | 60.59 |
| EES09184 | Sorghum | nucleus | 59.97 | 59.97 |
| Zm00001d023272_P009 | Maize | nucleus | 58.45 | 57.19 |
| Zm00001d052407_P004 | Maize | nucleus | 58.11 | 55.57 |
| GSMUA_Achr11P... | Banana | cytosol | 42.91 | 47.92 |
| GSMUA_Achr4P02300_001 | Banana | nucleus | 42.74 | 45.42 |
| KRG94958 | Soybean | nucleus | 37.67 | 42.31 |
| KRH64929 | Soybean | nucleus | 37.16 | 42.06 |
| KRH57843 | Soybean | mitochondrion | 33.78 | 37.95 |
| Solyc11g012740.1.1 | Tomato | nucleus | 32.6 | 36.42 |
| TraesCS5D01G113800.2 | Wheat | nucleus | 31.08 | 35.94 |
| VIT_08s0056g00770.t01 | Wine grape | cytosol | 39.19 | 34.73 |
| TraesCS3D01G429500.1 | Wheat | nucleus | 18.07 | 23.31 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G150900.1 | EnsemblPlantsGene:TraesCS5D01G150900 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 |
| InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF9 | PFAM:PF04818 |
| PFscan:PS51391 | SEG:seg | SMART:SM00582 | SUPFAM:SSF48464 | TIGR:cd03562 | MapMan:35.2 |
Description
No Description!
Coordinates
chr5D:-:240082867..240091521
Molecular Weight (calculated)
63468.2 Da
IEP (calculated)
7.505
GRAVY (calculated)
-0.492
Length
592 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAKADAKA EPTGGGGGGS FTEERLSEKL NKLSSSAASI QTLSNWCIFH RKRARRVVDT WQRQFNNATT DKKVAFLYLS NDILQNSKRK GGEFVNEFWR
101: VLPGLLKDFY ENGGQDGKKV VARLIGIWDE RKVFGTRSES LKDILGDNPP ALNNNSTTSN PTSKPSSVSK SSQRDSSPIT KKLTVSGMPE KIITAYQSVL
201: DQYFDEDTAL NKCKITVGVL EKMNKDVDEA CTNDIQQALS LISNLQEQEA ILKQCIEQLE SVDAARITLI SNLKEALSEE EKKSELLRHQ LQVARAEAEH
301: AVQLRQRFGG AHAINGAWSS SSTLMTTIPS EQTAAMMQNA AISPISPQFQ PPHPAIPLSA TASAADDEPK KTAAAMADKL ASLASPEQVL SSILASLAAE
401: QAASMNGGSP SVELSEGPPG FQIPKRPRIE NPTQTGDMGA PPFFGQLLQA QQNGAAPTSL GGMQSSMQAN QAPGAFAPPP PPLPPMLPPL LQQFSQNGGG
501: MFGMGPFGML ASSMPPPLPN MLPPGFPRPS GPPPPPPLSP AQNQSQTQQQ QQQQQSPQAP QQSPTSTGFF PTPGIGFFPP VQMQQSPSVQ RQ
101: VLPGLLKDFY ENGGQDGKKV VARLIGIWDE RKVFGTRSES LKDILGDNPP ALNNNSTTSN PTSKPSSVSK SSQRDSSPIT KKLTVSGMPE KIITAYQSVL
201: DQYFDEDTAL NKCKITVGVL EKMNKDVDEA CTNDIQQALS LISNLQEQEA ILKQCIEQLE SVDAARITLI SNLKEALSEE EKKSELLRHQ LQVARAEAEH
301: AVQLRQRFGG AHAINGAWSS SSTLMTTIPS EQTAAMMQNA AISPISPQFQ PPHPAIPLSA TASAADDEPK KTAAAMADKL ASLASPEQVL SSILASLAAE
401: QAASMNGGSP SVELSEGPPG FQIPKRPRIE NPTQTGDMGA PPFFGQLLQA QQNGAAPTSL GGMQSSMQAN QAPGAFAPPP PPLPPMLPPL LQQFSQNGGG
501: MFGMGPFGML ASSMPPPLPN MLPPGFPRPS GPPPPPPLSP AQNQSQTQQQ QQQQQSPQAP QQSPTSTGFF PTPGIGFFPP VQMQQSPSVQ RQ
001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
Arabidopsis Description
At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.