Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G139700.1 | Wheat | nucleus | 95.29 | 95.29 |
| TraesCS5D01G150900.1 | Wheat | nucleus | 91.92 | 92.23 |
| HORVU0Hr1G010590.1 | Barley | cytosol | 88.05 | 83.15 |
| TraesCS4A01G188700.1 | Wheat | nucleus | 66.5 | 67.99 |
| Os12t0126800-01 | Rice | nucleus | 65.82 | 66.84 |
| Os11t0130100-01 | Rice | cytosol, nucleus | 52.19 | 65.96 |
| EES16544 | Sorghum | nucleus | 62.96 | 63.5 |
| Zm00001d044657_P002 | Maize | nucleus | 61.95 | 62.8 |
| EES09184 | Sorghum | nucleus | 59.76 | 59.97 |
| Zm00001d005013_P001 | Maize | nucleus, plastid | 44.44 | 59.46 |
| Zm00001d005012_P002 | Maize | nucleus, plastid | 42.26 | 59.34 |
| Zm00001d023272_P009 | Maize | nucleus | 57.41 | 56.36 |
| Zm00001d052407_P004 | Maize | nucleus | 57.58 | 55.25 |
| GSMUA_Achr11P... | Banana | cytosol | 42.93 | 48.11 |
| GSMUA_Achr4P02300_001 | Banana | nucleus | 42.76 | 45.6 |
| KRG94958 | Soybean | nucleus | 38.05 | 42.88 |
| KRH64929 | Soybean | nucleus | 37.21 | 42.26 |
| KRH57843 | Soybean | mitochondrion | 34.18 | 38.52 |
| Solyc11g012740.1.1 | Tomato | nucleus | 32.83 | 36.79 |
| TraesCS5A01G101800.1 | Wheat | nucleus | 30.64 | 35.55 |
| VIT_08s0056g00770.t01 | Wine grape | cytosol | 38.55 | 34.28 |
| TraesCS3A01G437300.1 | Wheat | nucleus | 18.86 | 23.78 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G141400.1 | EnsemblPlantsGene:TraesCS5A01G141400 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 |
| InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF9 | PFAM:PF04818 |
| PFscan:PS51391 | SEG:seg | SMART:SM00582 | SUPFAM:SSF48464 | TIGR:cd03562 | MapMan:35.2 |
Description
No Description!
Coordinates
chr5A:+:313871192..313882097
Molecular Weight (calculated)
63463.3 Da
IEP (calculated)
7.454
GRAVY (calculated)
-0.451
Length
594 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAKADAKA EPTATGGGGG GGGGSFTEER LSEKLNKLSS SAASIQTLSN WCIFHRKRAR RVVDTWQRQF NNATTDKKVS FLYLSNDILQ NSKRKGGEFV
101: NEFWRVLPGL LKDFYENGGQ DGKKVVARLI GIWDERKVFG TRSESLKDIL GDNPPALNSN STTSNPTSKP SSVSKSSQRD SSPIIKKLTV SGMPEKIITA
201: YQSVLDQYFD EDTALNKCKI TVGVLEKMNK DVDEACTNDI QQVSSLISNL QEQEAILKQC IEQLESVDAA RITLISNLKE ALSEEEKKSE LLRNQLQVAR
301: AEAEHAVQLR QRFGGAHAIN GAWSSSSTLM TTIPSEQTAA MMQNAAISPI TPQFQPPHPA IPLSATASAA DDEPKKTAAA MADKLASLAS PEQVLSSILA
401: SLAAEQAASM NGGPPSVELS EGPPGFQIPK RPRIENPTQT GDMGAPPFFG QLLQAQQNGA APTSLGGMQS SMQANQALGA FAPLPPPLPP MLPPLLQQFS
501: QNGGGMFGMG PFGMLASSMP PPLPNMLPPG FPRPSGPPPP PPLSPAQNQS QTQQQQQSPQ APQQSPTSTG FFPTPGIGFF PPVQMQQSPS VQRQ
101: NEFWRVLPGL LKDFYENGGQ DGKKVVARLI GIWDERKVFG TRSESLKDIL GDNPPALNSN STTSNPTSKP SSVSKSSQRD SSPIIKKLTV SGMPEKIITA
201: YQSVLDQYFD EDTALNKCKI TVGVLEKMNK DVDEACTNDI QQVSSLISNL QEQEAILKQC IEQLESVDAA RITLISNLKE ALSEEEKKSE LLRNQLQVAR
301: AEAEHAVQLR QRFGGAHAIN GAWSSSSTLM TTIPSEQTAA MMQNAAISPI TPQFQPPHPA IPLSATASAA DDEPKKTAAA MADKLASLAS PEQVLSSILA
401: SLAAEQAASM NGGPPSVELS EGPPGFQIPK RPRIENPTQT GDMGAPPFFG QLLQAQQNGA APTSLGGMQS SMQANQALGA FAPLPPPLPP MLPPLLQQFS
501: QNGGGMFGMG PFGMLASSMP PPLPNMLPPG FPRPSGPPPP PPLSPAQNQS QTQQQQQSPQ APQQSPTSTG FFPTPGIGFF PPVQMQQSPS VQRQ
001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
Arabidopsis Description
At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.