Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G128200.1 | Wheat | nucleus | 97.59 | 97.42 |
| TraesCS4D01G124400.1 | Wheat | nucleus | 93.8 | 93.8 |
| HORVU4Hr1G026870.2 | Barley | nucleus | 91.74 | 91.11 |
| Os12t0126800-01 | Rice | nucleus | 68.67 | 68.21 |
| Os11t0130100-01 | Rice | cytosol, nucleus | 54.73 | 67.66 |
| TraesCS5A01G141400.1 | Wheat | nucleus | 67.99 | 66.5 |
| Zm00001d005012_P002 | Maize | nucleus, plastid | 46.82 | 64.3 |
| Zm00001d044657_P002 | Maize | nucleus | 64.72 | 64.16 |
| EES16544 | Sorghum | nucleus | 64.72 | 63.84 |
| Zm00001d005013_P001 | Maize | nucleus, plastid | 47.5 | 62.16 |
| EES09184 | Sorghum | nucleus | 62.13 | 60.98 |
| Zm00001d052407_P004 | Maize | nucleus | 61.1 | 57.35 |
| Zm00001d023272_P009 | Maize | nucleus | 58.35 | 56.03 |
| GSMUA_Achr11P... | Banana | cytosol | 42.0 | 46.04 |
| GSMUA_Achr4P02300_001 | Banana | nucleus | 42.0 | 43.81 |
| KRG94958 | Soybean | nucleus | 38.04 | 41.94 |
| KRH64929 | Soybean | nucleus | 37.69 | 41.87 |
| KRH57843 | Soybean | mitochondrion | 35.63 | 39.28 |
| TraesCS5A01G101800.1 | Wheat | nucleus | 33.39 | 37.89 |
| Solyc11g012740.1.1 | Tomato | nucleus | 33.39 | 36.6 |
| VIT_08s0056g00770.t01 | Wine grape | cytosol | 39.24 | 34.13 |
| TraesCS3A01G437300.1 | Wheat | nucleus | 18.42 | 22.72 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G188700.1 | EnsemblPlantsGene:TraesCS4A01G188700 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 |
| InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF9 | PFAM:PF04818 |
| PFscan:PS51391 | SEG:seg | SMART:SM00582 | SUPFAM:SSF48464 | TIGR:cd03562 | MapMan:35.2 |
Description
No Description!
Coordinates
chr4A:+:467516912..467538652
Molecular Weight (calculated)
61874.1 Da
IEP (calculated)
6.884
GRAVY (calculated)
-0.483
Length
581 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGTKADAKA ETSGGGGSFS EKGLAEKLNK LNSSAASIQT LSHWCVFHRK RARRIVDTWE KQFNNATKDK KVSFLYLSND ILQNSKRKGG EFVNEFWKVL
101: PGSLKDVHDN GGEHGKKVVA RLIGIWDERK VFGTRIESLK VDILGENPPT LDNNDNGSNP SPNPSSDPKA ARKDSSTYIK ELTVSGMPEK IATAYQSVVD
201: QYFDEDAALN KCKTTVNVLE KMDKDVDNAC THGIPQASSL VSDLQEQEAV LKKCIEQLES VDTARINLIN QLKVALSEQE GKSELLRTQL QVARAEAEHA
301: MQLRQRLGGA PVTNGPGSSS GPPMITFPSG QTTAVMQNSE ASPISPQFQL VHPATSPPTM TSAMGDEPKI TAAAMADKLA SLSSGQQVLS SIFSSLAAEQ
401: AASINGGSSS GELSAGPPGF DRPKRPRLEQ QAGDTGAPPF FAQVPQVQQQ IGAAPTSLGS TQSPAQANQV PGSFAPSPLQ PMVPQLMQQF SQNTGGPGGM
501: FGMIPFGMMA GSMPPPLPLL PAGFAMPNEP PPPPPLPPIQ QQQQSPQAPQ QSPTSTGFFP TSSTGFFPPV QVQQSPSVQR Q
101: PGSLKDVHDN GGEHGKKVVA RLIGIWDERK VFGTRIESLK VDILGENPPT LDNNDNGSNP SPNPSSDPKA ARKDSSTYIK ELTVSGMPEK IATAYQSVVD
201: QYFDEDAALN KCKTTVNVLE KMDKDVDNAC THGIPQASSL VSDLQEQEAV LKKCIEQLES VDTARINLIN QLKVALSEQE GKSELLRTQL QVARAEAEHA
301: MQLRQRLGGA PVTNGPGSSS GPPMITFPSG QTTAVMQNSE ASPISPQFQL VHPATSPPTM TSAMGDEPKI TAAAMADKLA SLSSGQQVLS SIFSSLAAEQ
401: AASINGGSSS GELSAGPPGF DRPKRPRLEQ QAGDTGAPPF FAQVPQVQQQ IGAAPTSLGS TQSPAQANQV PGSFAPSPLQ PMVPQLMQQF SQNTGGPGGM
501: FGMIPFGMMA GSMPPPLPLL PAGFAMPNEP PPPPPLPPIQ QQQQSPQAPQ QSPTSTGFFP TSSTGFFPPV QVQQSPSVQR Q
001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
Arabidopsis Description
At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.