CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005012_P002	Maize	nucleus, plastid	54.39	76.12
Zm00001d005013_P001	Maize	nucleus, plastid	56.93	75.9
Zm00001d052407_P004	Maize	nucleus	76.52	73.18
EES16544	Sorghum	nucleus	67.91	68.25
TraesCS4B01G128200.1	Wheat	nucleus	61.66	62.71
Os12t0126800-01	Rice	nucleus	61.49	62.22
TraesCS4A01G188700.1	Wheat	nucleus	60.98	62.13
HORVU4Hr1G026870.2	Barley	nucleus	60.81	61.54
Os11t0130100-01	Rice	cytosol, nucleus	48.82	61.49
TraesCS4D01G124400.1	Wheat	nucleus	60.3	61.45
TraesCS5D01G150900.1	Wheat	nucleus	59.97	59.97
TraesCS5A01G141400.1	Wheat	nucleus	59.97	59.76
TraesCS5B01G139700.1	Wheat	nucleus	59.97	59.76
HORVU0Hr1G010590.1	Barley	cytosol	58.11	54.69
GSMUA_Achr11P...	Banana	cytosol	40.03	44.72
GSMUA_Achr4P02300_001	Banana	nucleus	41.89	44.52
KRH64929	Soybean	nucleus	36.15	40.92
KRG94958	Soybean	nucleus	36.15	40.61
KRH57843	Soybean	mitochondrion	32.43	36.43
Solyc11g012740.1.1	Tomato	nucleus	32.43	36.23
EES12937	Sorghum	nucleus	29.56	33.21
VIT_08s0056g00770.t01	Wine grape	cytosol	37.33	33.08
EES04124	Sorghum	nucleus	20.1	23.56

Protein Annotations

EnsemblPlants:EES09184	EnsemblPlantsGene:SORBI_3005G021500	Gene3D:1.25.40.90	InterPro:CID_dom	InterPro:ENTH_VHS	InterPro:IPR006569
InterPro:IPR008942	InterPro:RNA_pol_II-bd	ncoils:Coil	PANTHER:PTHR12460	PANTHER:PTHR12460:SF9	PFAM:PF04818
PFscan:PS51391	ProteinID:EES09184	ProteinID:EES09184.2	SEG:seg	SMART:SM00582	SUPFAM:SSF48464
unigene:Sbi.19760	UniParc:UPI00081AB9A4	UniProt:C5Y3Z1	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr5:-:1977764..1985744

Molecular Weight (calculated)

62977.8 Da

IEP (calculated)

8.448

GRAVY (calculated)

-0.445

Length

592 amino acids

Sequence
(BLAST)

001: MAGAKADVDA ETGDGGGAGG GSSGGSFSEQ RLIDKLNRLN NSATSIQTLS QWCIFHRKRA KRVVDTWEKQ FTIAREDKKI SFLYLSNDIL QNSKRKGADY
101: VDEFWRVLPR SLKHVYEKGG EEGKKQVARL ILIWDDRKVF GSRIESMKND ILGDDPPILV NNGNSLNPSS NPTSNSKAAR KDSGTIVKKL VVGGMPEKIV
201: SAYQSVLDRH FDEDTALNKC KTTVGLLERI DKDINDASIN GNQPASSLIS DLQEQEMTLK QCIEQLESVD MARVSLINQL KEALSEQESK SVVLRGQLQV
301: AQAEAQRVIQ LREQLGRALV TSVTQSTSSQ LMITPPEQTS AIMQGSGVRS TPLQSQPLNP ATSLPPTVSA VGDESKRTAA AMADKLASLS APVQVLTSIL
401: SSFAAEQAAS INGGSPSGEF SGGPPGFQVD KRPRLEKTGQ AADMGAPPFF GQAPQVQQQI GAVPTSLGGT HPPTPGPFPP PPPPLPSLLS PLMQPFGQNT
501: GGMIGMGGPF GMMAGSMPPP PPLTNILPSG FPGPSGPPPP PPLPPAQSQA QQQQQSPQAP QQSPTSAGFF QSSGMGFFPP VQLQQSPSAQ RQ

Best Arabidopsis Sequence Match ( AT5G65180.1 )
(BLAST)

001: MSSPFSEEIL IDNLAKLNST QQSIQTLSQW CIVHRSEAEL VVTTWEKQFH STQIGQKVPL LYLANDILQN SKRQGNEFVQ EFWKVLPGAL KDIVSLGDDY
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS

Arabidopsis Description

ENTH/VHS family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.