Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G150900.1 | Wheat | nucleus | 84.26 | 89.53 |
| TraesCS5A01G141400.1 | Wheat | nucleus | 83.15 | 88.05 |
| TraesCS5B01G139700.1 | Wheat | nucleus | 81.88 | 86.7 |
| HORVU4Hr1G026870.2 | Barley | nucleus | 61.53 | 66.15 |
| Os12t0126800-01 | Rice | nucleus | 61.21 | 65.81 |
| Os11t0130100-01 | Rice | cytosol, nucleus | 48.65 | 65.11 |
| Zm00001d044657_P002 | Maize | nucleus | 58.03 | 62.29 |
| EES16544 | Sorghum | nucleus | 57.87 | 61.8 |
| EES09184 | Sorghum | nucleus | 54.69 | 58.11 |
| Zm00001d005012_P002 | Maize | nucleus, plastid | 38.95 | 57.92 |
| Zm00001d005013_P001 | Maize | nucleus, plastid | 40.7 | 57.66 |
| Zm00001d023272_P009 | Maize | nucleus | 53.42 | 55.54 |
| Zm00001d052407_P004 | Maize | nucleus | 53.26 | 54.12 |
| GSMUA_Achr11P... | Banana | cytosol | 40.06 | 47.55 |
| GSMUA_Achr4P02300_001 | Banana | nucleus | 40.38 | 45.6 |
| KRH64929 | Soybean | nucleus | 35.93 | 43.21 |
| KRG94958 | Soybean | nucleus | 35.77 | 42.69 |
| KRH57843 | Soybean | mitochondrion | 33.07 | 39.47 |
| Solyc11g012740.1.1 | Tomato | nucleus | 31.0 | 36.79 |
| HORVU5Hr1G027930.1 | Barley | nucleus | 28.93 | 35.55 |
| VIT_08s0056g00770.t01 | Wine grape | cytosol | 37.52 | 35.33 |
| HORVU3Hr1G095600.3 | Barley | extracellular | 8.11 | 34.69 |
| HORVU3Hr1G095520.4 | Barley | cytosol, nucleus | 11.61 | 19.84 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G010590.1 | EnsemblPlantsGene:HORVU0Hr1G010590 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 |
| InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF9 | PFAM:PF04818 |
| PFscan:PS51391 | SEG:seg | SMART:SM00582 | SUPFAM:SSF48464 | UniParc:UPI000B478419 | UniProt:A0A287DZ88 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchrUn:-:60348685..60357398
Molecular Weight (calculated)
67584.0 Da
IEP (calculated)
7.980
GRAVY (calculated)
-0.480
Length
629 amino acids
Sequence
(BLAST)
(BLAST)
001: RELATVINSI LSAQGVHISL GFKRVREGAE LGGAFLMAAT KADAKAEPTG GGGGGGSFTE ERLSEKLNKL SSSAASIQTL SNWCIFHRKR ARRVVDTWQR
101: QFNNATTDKK VSFLYLSNDI LQNSKRKGGE FVNEFWRVLP GLLKDFYENG GQDGKKVVAR LIGIWDERKV FGTRSESLKD ILGDNPPALN NNSTTSNPTS
201: KPSSVSKSSQ RDSSPIIKKL TVSGMPEKII TAYQSVLDQY FDEDTALNKC KITVGVVEKM NKDVDEACTN DIQQASSLIF NLQEQEAILK QCIEQLESFD
301: AARITLINNL KEALSEEETK SELLRNQLQV ARAEAEHAVQ LRQRFGGAHA TNRAWSSSST LMTTIPSEQT AAMMQNAAIS PITSQFQPPH PAIPLSGTAS
401: AADDEPKKTA AAMADKLASL ASPEQVLSSI LASLVAEQAA SMNSSPSVEL SEGPPGFQIP KRPRIENPTQ TGDMGAPSFF GQLPQAQQNG AAPTSLGGMQ
501: PSLQANQAPG AFPPPPPPLP PLVQQFSQNG GGMFGMGPFG MLASSMPPPL PNMPPPLPNM PPPGFPRPSG PPPPPPLSPA QNQSQTQQQQ QQSPQAPQQS
601: PTSTGFFPTQ GIGFFHPVQM QQSPSVQRQ
101: QFNNATTDKK VSFLYLSNDI LQNSKRKGGE FVNEFWRVLP GLLKDFYENG GQDGKKVVAR LIGIWDERKV FGTRSESLKD ILGDNPPALN NNSTTSNPTS
201: KPSSVSKSSQ RDSSPIIKKL TVSGMPEKII TAYQSVLDQY FDEDTALNKC KITVGVVEKM NKDVDEACTN DIQQASSLIF NLQEQEAILK QCIEQLESFD
301: AARITLINNL KEALSEEETK SELLRNQLQV ARAEAEHAVQ LRQRFGGAHA TNRAWSSSST LMTTIPSEQT AAMMQNAAIS PITSQFQPPH PAIPLSGTAS
401: AADDEPKKTA AAMADKLASL ASPEQVLSSI LASLVAEQAA SMNSSPSVEL SEGPPGFQIP KRPRIENPTQ TGDMGAPSFF GQLPQAQQNG AAPTSLGGMQ
501: PSLQANQAPG AFPPPPPPLP PLVQQFSQNG GGMFGMGPFG MLASSMPPPL PNMPPPLPNM PPPGFPRPSG PPPPPPLSPA QNQSQTQQQQ QQSPQAPQQS
601: PTSTGFFPTQ GIGFFHPVQM QQSPSVQRQ
001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
Arabidopsis Description
At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.