Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G027930.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10060.1 | HORVU5Hr1G027930.1 | AT5G10060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G101800.1 | Wheat | nucleus | 96.29 | 96.29 |
| TraesCS5D01G113800.2 | Wheat | nucleus | 96.09 | 96.09 |
| TraesCS5B01G106400.1 | Wheat | nucleus | 92.19 | 92.19 |
| Os04t0636700-01 | Rice | nucleus | 79.69 | 77.27 |
| EES12937 | Sorghum | nucleus | 78.52 | 76.28 |
| Zm00001d002140_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 71.88 | 64.0 |
| GSMUA_Achr4P09200_001 | Banana | nucleus | 56.84 | 51.41 |
| KRG97617 | Soybean | mitochondrion | 32.03 | 50.0 |
| GSMUA_Achr8P24850_001 | Banana | cytosol | 52.73 | 49.45 |
| AT5G65180.1 | Thale cress | nucleus | 39.65 | 46.24 |
| VIT_07s0031g01240.t01 | Wine grape | nucleus | 46.68 | 45.61 |
| KRH43251 | Soybean | nucleus | 44.73 | 44.99 |
| Solyc04g054410.2.1 | Tomato | nucleus | 44.34 | 44.25 |
| Bra006045.1-P | Field mustard | nucleus | 39.45 | 43.44 |
| KRH59408 | Soybean | nucleus | 40.82 | 43.27 |
| CDX78365 | Canola | nucleus | 39.06 | 42.73 |
| AT5G10060.1 | Thale cress | nucleus | 38.48 | 42.0 |
| CDY40076 | Canola | nucleus | 38.09 | 41.94 |
| CDX81155 | Canola | nucleus | 37.89 | 41.9 |
| PGSC0003DMT400033300 | Potato | nucleus | 36.91 | 41.36 |
| KRH31254 | Soybean | nucleus | 42.97 | 39.86 |
| HORVU3Hr1G095600.3 | Barley | extracellular | 11.13 | 38.78 |
| HORVU4Hr1G026870.2 | Barley | nucleus | 37.3 | 32.65 |
| HORVU0Hr1G010590.1 | Barley | cytosol | 35.55 | 28.93 |
| HORVU3Hr1G095520.4 | Barley | cytosol, nucleus | 12.11 | 16.85 |
Protein Annotations
| EMBL:AK358965 | EMBL:AK364732 | EnsemblPlants:HORVU5Hr1G027930.1 | EnsemblPlantsGene:HORVU5Hr1G027930 | Gene3D:1.25.40.90 | InterPro:CID_dom |
| InterPro:ENTH_VHS | InterPro:IPR006569 | InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 |
| PANTHER:PTHR12460:SF4 | PFAM:PF04818 | PFscan:PS51391 | SEG:seg | SMART:SM00582 | SUPFAM:SSF48464 |
| UniParc:UPI0002005C40 | UniProt:F2D505 | MapMan:35.2 | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D505]
Coordinates
chrchr5H:+:161290939..161294072
Molecular Weight (calculated)
57016.3 Da
IEP (calculated)
8.225
GRAVY (calculated)
-0.593
Length
512 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAFSEEIL ADKLAKLNNT QQCIETLSHW CIYHRKDAEL IVQTWAKQFH NSGNEQKVPF LYLANDILQN SKRNGTEFVE EFWKVLPTML KDVAEKGDDR
101: GKKTVSRLVD IWQERRVFGL RAGGIKDVML GTAPLPVLDM TKKRSHSSSI KIVKRDSRSV KLRLGVGGTA ERIVTALHAV LSEQADEDAD LENCKTSMRH
201: IGKMEKDVDS ACSKAEDPRR ETLCTKLKDE EATMEKWIEK LKAVEENRAA VVSELKEALQ EQESELEKVR TQLQLAEAMV EETANMQRRL NNEPIIPSSK
301: LASSAEPGNS LSNGQVKGQQ KTAAAILADK IASSSNSQQI LQSALSKFAA ENSSEIRSDK RMKVEQSSQV PSVANAAAFV PMPPMVTTAA QQPQTILVQQ
401: TPVQGQASAP HPQYNIYQPP PQHFVQQPGG LIMGMPYSMS TMNPPPPPPP PQMMNLARAQ TQPQPPTQQM LQQQMQMNVA PQMQFTLQQP GAPQFRPLQP
501: PPGMQFFHHQ SQ
101: GKKTVSRLVD IWQERRVFGL RAGGIKDVML GTAPLPVLDM TKKRSHSSSI KIVKRDSRSV KLRLGVGGTA ERIVTALHAV LSEQADEDAD LENCKTSMRH
201: IGKMEKDVDS ACSKAEDPRR ETLCTKLKDE EATMEKWIEK LKAVEENRAA VVSELKEALQ EQESELEKVR TQLQLAEAMV EETANMQRRL NNEPIIPSSK
301: LASSAEPGNS LSNGQVKGQQ KTAAAILADK IASSSNSQQI LQSALSKFAA ENSSEIRSDK RMKVEQSSQV PSVANAAAFV PMPPMVTTAA QQPQTILVQQ
401: TPVQGQASAP HPQYNIYQPP PQHFVQQPGG LIMGMPYSMS TMNPPPPPPP PQMMNLARAQ TQPQPPTQQM LQQQMQMNVA PQMQFTLQQP GAPQFRPLQP
501: PPGMQFFHHQ SQ
001: MSSPFSEEIL IDNLAKLNST QQSIQTLSQW CIVHRSEAEL VVTTWEKQFH STQIGQKVPL LYLANDILQN SKRQGNEFVQ EFWKVLPGAL KDIVSLGDDY
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS
Arabidopsis Description
ENTH/VHS family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJP7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.