Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10060.1 | KRG97617 | AT5G10060.1 | 21798944 |
| AT5G10060.1 | KRH31254 | AT5G10060.1 | 21798944 |
| AT5G10060.1 | KRH43251 | AT5G10060.1 | 21798944 |
| AT5G10060.1 | KRH59408 | AT5G10060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG97617 | Soybean | mitochondrion | 42.75 | 71.95 |
| KRH43251 | Soybean | nucleus | 53.99 | 58.55 |
| VIT_07s0031g01240.t01 | Wine grape | nucleus | 53.62 | 56.49 |
| KRH59408 | Soybean | nucleus | 48.73 | 55.69 |
| AT5G65180.1 | Thale cress | nucleus | 41.3 | 51.94 |
| Solyc04g054410.2.1 | Tomato | nucleus | 48.01 | 51.66 |
| CDX78365 | Canola | nucleus | 42.57 | 50.21 |
| Bra006045.1-P | Field mustard | nucleus | 42.21 | 50.11 |
| PGSC0003DMT400033300 | Potato | nucleus | 41.3 | 49.89 |
| CDY40076 | Canola | nucleus | 41.67 | 49.46 |
| CDX81155 | Canola | nucleus | 41.49 | 49.46 |
| AT5G10060.1 | Thale cress | nucleus | 41.49 | 48.83 |
| GSMUA_Achr8P24850_001 | Banana | cytosol | 44.57 | 45.05 |
| GSMUA_Achr4P09200_001 | Banana | nucleus | 45.65 | 44.52 |
| TraesCS5A01G101800.1 | Wheat | nucleus | 40.4 | 43.55 |
| TraesCS5D01G113800.2 | Wheat | nucleus | 40.22 | 43.36 |
| EES12937 | Sorghum | nucleus | 41.3 | 43.26 |
| Os04t0636700-01 | Rice | nucleus | 41.3 | 43.18 |
| HORVU5Hr1G027930.1 | Barley | nucleus | 39.86 | 42.97 |
| TraesCS5B01G106400.1 | Wheat | nucleus | 39.49 | 42.58 |
| Zm00001d002140_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 40.94 | 39.3 |
| KRH64929 | Soybean | nucleus | 35.33 | 37.28 |
| KRG94958 | Soybean | nucleus | 34.6 | 36.24 |
| KRH57843 | Soybean | mitochondrion | 32.25 | 33.78 |
| KRG94593 | Soybean | nucleus | 30.8 | 32.57 |
| KRH06897 | Soybean | nucleus | 30.25 | 31.81 |
Protein Annotations
| Gene3D:1.25.40.90 | EntrezGene:100815709 | MapMan:35.2 | EMBL:ACUP02007133 | InterPro:CID_dom | ncoils:Coil |
| InterPro:ENTH_VHS | EnsemblPlantsGene:GLYMA_11G237400 | InterPro:IPR006569 | InterPro:IPR008942 | UniProt:K7LRU4 | EnsemblPlants:KRH31254 |
| ProteinID:KRH31254 | ProteinID:KRH31254.1 | PFAM:PF04818 | PFscan:PS51391 | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF4 |
| InterPro:RNA_pol_II-bd | SMART:SM00582 | SUPFAM:SSF48464 | UniParc:UPI000233D109 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr11:-:33183295..33187974
Molecular Weight (calculated)
61136.5 Da
IEP (calculated)
9.559
GRAVY (calculated)
-0.424
Length
552 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGVFSEQIL ADKLSKLNNT QQCIETLSHW CIFHRSKAEL FVATWKKQFD KSEMIQRIPL LYLANDILQN SKHKGNEFVT EFWKVLPAAL KDVIKKGDDH
101: GTRVVSRLIE IWEQRRVFGS RARNLKDLML GEDAPPPLEF GKKRSRSVRI VKRDSHSIKS KLSIGGTAEK IVSAFHLVLS EQSVEDAEIS KCKSSVQRVR
201: KMEKDVDTAC SVAKDPKRKT LAKELEEEEN ILKRCVEKLK LVEASRVALV SQLKEALHEQ ESELENVRTQ MQVAQAQIEE ACNMRRILDN EDFSQKVSVA
301: KSAAAIAAEV ADKLAASSSS QLIMTSVLST FAAEEAKNAG LTSESTSKHE IPMTSSDPHM FRSPQQLIAA PNHSYPSVLV AQPPPLQNAA PSSQGQFHML
401: SNPPSQQFVQ STGGIITPYG YGSIPPLPPA PQLPTHVGAM VPLTHQTLQI TPHQQIPITQ QAPAPPTFRP LQPPGMVYYT NHQHSIHATL GRELANVGSK
501: TITSLGRETL LPNILTELLI QSTDPNANGD LMNQALIPSP PKKAKNKSNR RT
101: GTRVVSRLIE IWEQRRVFGS RARNLKDLML GEDAPPPLEF GKKRSRSVRI VKRDSHSIKS KLSIGGTAEK IVSAFHLVLS EQSVEDAEIS KCKSSVQRVR
201: KMEKDVDTAC SVAKDPKRKT LAKELEEEEN ILKRCVEKLK LVEASRVALV SQLKEALHEQ ESELENVRTQ MQVAQAQIEE ACNMRRILDN EDFSQKVSVA
301: KSAAAIAAEV ADKLAASSSS QLIMTSVLST FAAEEAKNAG LTSESTSKHE IPMTSSDPHM FRSPQQLIAA PNHSYPSVLV AQPPPLQNAA PSSQGQFHML
401: SNPPSQQFVQ STGGIITPYG YGSIPPLPPA PQLPTHVGAM VPLTHQTLQI TPHQQIPITQ QAPAPPTFRP LQPPGMVYYT NHQHSIHATL GRELANVGSK
501: TITSLGRETL LPNILTELLI QSTDPNANGD LMNQALIPSP PKKAKNKSNR RT
001: MSSVFSDQIL IDKLAKLNSS QQSIETLSHW CIFNRSKAEL IVTTWEKQFH STEMDQKVPL LYLANDILQN SKRQGNEFVQ EFWNVLPKAL KDIVSQGDDN
101: GKSAVARVIK IWEERRVFGS RSKSLKDVML GEDVPLPLDI SKKRPRGSKS SKRESKSSRT KLASSGGVAE KIASAYHLVV AENSNEEAEM NKCKSAVKRI
201: RKMEKDVEEA CSTAKDNPKR KSLAKELEEE EYLLRQCIEK LKSVQGSRSS LVNQLKDALR EQESELDNLK AQIQVAKEQT EEAQNMQKRL NDEDYTSKQT
301: TAATTITETN DNTKSGQASK MTPASIAAML TASTSSHMIM QSVLSSFAAE ATKTSGLSKS ESTVPVSDTN ASFPSYNNSQ NQTPTTQGQY HVIPNPPPPQ
401: FLKPPVMNNP YAFGNIPLMP PGLPPPPPPP HLIGNQQPQI PQSNSAQQSQ QGPTFQPPGI MYYGAPHHS
101: GKSAVARVIK IWEERRVFGS RSKSLKDVML GEDVPLPLDI SKKRPRGSKS SKRESKSSRT KLASSGGVAE KIASAYHLVV AENSNEEAEM NKCKSAVKRI
201: RKMEKDVEEA CSTAKDNPKR KSLAKELEEE EYLLRQCIEK LKSVQGSRSS LVNQLKDALR EQESELDNLK AQIQVAKEQT EEAQNMQKRL NDEDYTSKQT
301: TAATTITETN DNTKSGQASK MTPASIAAML TASTSSHMIM QSVLSSFAAE ATKTSGLSKS ESTVPVSDTN ASFPSYNNSQ NQTPTTQGQY HVIPNPPPPQ
401: FLKPPVMNNP YAFGNIPLMP PGLPPPPPPP HLIGNQQPQI PQSNSAQQSQ QGPTFQPPGI MYYGAPHHS
Arabidopsis Description
At5g10060 [Source:UniProtKB/TrEMBL;Acc:Q8GUK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.