Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006045.1-P | Field mustard | nucleus | 78.89 | 79.57 |
| CDX78365 | Canola | nucleus | 77.4 | 77.56 |
| CDX81155 | Canola | nucleus | 75.69 | 76.67 |
| CDY40076 | Canola | nucleus | 73.56 | 74.19 |
| AT5G65180.1 | Thale cress | nucleus | 62.05 | 66.29 |
| KRG97617 | Soybean | mitochondrion | 34.97 | 50.0 |
| VIT_07s0031g01240.t01 | Wine grape | nucleus | 54.16 | 48.47 |
| Solyc04g054410.2.1 | Tomato | nucleus | 50.96 | 46.59 |
| KRH43251 | Soybean | nucleus | 50.32 | 46.37 |
| PGSC0003DMT400033300 | Potato | nucleus | 44.14 | 45.3 |
| KRH59408 | Soybean | nucleus | 45.84 | 44.51 |
| KRH31254 | Soybean | nucleus | 48.83 | 41.49 |
| EES12937 | Sorghum | nucleus | 43.92 | 39.09 |
| HORVU5Hr1G027930.1 | Barley | nucleus | 42.0 | 38.48 |
| GSMUA_Achr8P24850_001 | Banana | cytosol | 44.78 | 38.46 |
| TraesCS5B01G106400.1 | Wheat | nucleus | 41.79 | 38.28 |
| TraesCS5D01G113800.2 | Wheat | nucleus | 41.79 | 38.28 |
| TraesCS5A01G101800.1 | Wheat | nucleus | 41.58 | 38.09 |
| Os04t0636700-01 | Rice | nucleus | 42.86 | 38.07 |
| GSMUA_Achr4P09200_001 | Banana | nucleus | 45.84 | 37.99 |
| Zm00001d002140_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 42.86 | 34.96 |
| AT3G26990.1 | Thale cress | nucleus | 31.56 | 28.85 |
Protein Annotations
| Gene3D:1.25.40.90 | MapMan:35.2 | EntrezGene:830870 | ProteinID:AED91488.1 | ArrayExpress:AT5G10060 | EnsemblPlantsGene:AT5G10060 |
| RefSeq:AT5G10060 | TAIR:AT5G10060 | RefSeq:AT5G10060-TAIR-G | EnsemblPlants:AT5G10060.1 | TAIR:AT5G10060.1 | EMBL:BT002418 |
| EMBL:BT020375 | InterPro:CID_dom | ncoils:Coil | InterPro:ENTH_VHS | GO:GO:0003674 | GO:GO:0008150 |
| InterPro:IPR006569 | InterPro:IPR008942 | RefSeq:NP_196568.2 | PFAM:PF04818 | PO:PO:0000293 | PFscan:PS51391 |
| PANTHER:PTHR12460 | PANTHER:PTHR12460:SF4 | UniProt:Q8GUK8 | InterPro:RNA_pol_II-bd | SMART:SM00582 | SUPFAM:SSF48464 |
| UniParc:UPI00000AE1FE | SEG:seg | : | : | : | : |
Description
At5g10060 [Source:UniProtKB/TrEMBL;Acc:Q8GUK8]
Coordinates
chr5:-:3145749..3148400
Molecular Weight (calculated)
51957.4 Da
IEP (calculated)
8.996
GRAVY (calculated)
-0.720
Length
469 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSVFSDQIL IDKLAKLNSS QQSIETLSHW CIFNRSKAEL IVTTWEKQFH STEMDQKVPL LYLANDILQN SKRQGNEFVQ EFWNVLPKAL KDIVSQGDDN
101: GKSAVARVIK IWEERRVFGS RSKSLKDVML GEDVPLPLDI SKKRPRGSKS SKRESKSSRT KLASSGGVAE KIASAYHLVV AENSNEEAEM NKCKSAVKRI
201: RKMEKDVEEA CSTAKDNPKR KSLAKELEEE EYLLRQCIEK LKSVQGSRSS LVNQLKDALR EQESELDNLK AQIQVAKEQT EEAQNMQKRL NDEDYTSKQT
301: TAATTITETN DNTKSGQASK MTPASIAAML TASTSSHMIM QSVLSSFAAE ATKTSGLSKS ESTVPVSDTN ASFPSYNNSQ NQTPTTQGQY HVIPNPPPPQ
401: FLKPPVMNNP YAFGNIPLMP PGLPPPPPPP HLIGNQQPQI PQSNSAQQSQ QGPTFQPPGI MYYGAPHHS
101: GKSAVARVIK IWEERRVFGS RSKSLKDVML GEDVPLPLDI SKKRPRGSKS SKRESKSSRT KLASSGGVAE KIASAYHLVV AENSNEEAEM NKCKSAVKRI
201: RKMEKDVEEA CSTAKDNPKR KSLAKELEEE EYLLRQCIEK LKSVQGSRSS LVNQLKDALR EQESELDNLK AQIQVAKEQT EEAQNMQKRL NDEDYTSKQT
301: TAATTITETN DNTKSGQASK MTPASIAAML TASTSSHMIM QSVLSSFAAE ATKTSGLSKS ESTVPVSDTN ASFPSYNNSQ NQTPTTQGQY HVIPNPPPPQ
401: FLKPPVMNNP YAFGNIPLMP PGLPPPPPPP HLIGNQQPQI PQSNSAQQSQ QGPTFQPPGI MYYGAPHHS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.