Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g054410.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10060.1 | Solyc04g054410.2.1 | AT5G10060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400033300 | Potato | nucleus | 81.29 | 91.25 |
| VIT_07s0031g01240.t01 | Wine grape | nucleus | 62.38 | 61.07 |
| KRG97617 | Soybean | mitochondrion | 37.43 | 58.54 |
| KRH43251 | Soybean | nucleus | 56.34 | 56.78 |
| KRH59408 | Soybean | nucleus | 51.85 | 55.07 |
| AT5G65180.1 | Thale cress | nucleus | 46.0 | 53.76 |
| CDY40076 | Canola | nucleus | 46.39 | 51.18 |
| AT5G10060.1 | Thale cress | nucleus | 46.59 | 50.96 |
| CDX81155 | Canola | nucleus | 45.61 | 50.54 |
| Bra006045.1-P | Field mustard | nucleus | 45.61 | 50.32 |
| CDX78365 | Canola | nucleus | 45.22 | 49.57 |
| KRH31254 | Soybean | nucleus | 51.66 | 48.01 |
| GSMUA_Achr8P24850_001 | Banana | cytosol | 50.49 | 47.44 |
| GSMUA_Achr4P09200_001 | Banana | nucleus | 51.66 | 46.82 |
| TraesCS5B01G106400.1 | Wheat | nucleus | 46.0 | 46.09 |
| TraesCS5A01G101800.1 | Wheat | nucleus | 45.42 | 45.51 |
| TraesCS5D01G113800.2 | Wheat | nucleus | 45.42 | 45.51 |
| Os04t0636700-01 | Rice | nucleus | 46.2 | 44.89 |
| EES12937 | Sorghum | nucleus | 46.0 | 44.78 |
| HORVU5Hr1G027930.1 | Barley | nucleus | 44.25 | 44.34 |
| Zm00001d002140_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 44.25 | 39.48 |
| Solyc11g012740.1.1 | Tomato | nucleus | 32.36 | 31.32 |
| Solyc02g094360.2.1 | Tomato | nucleus | 30.41 | 30.12 |
Protein Annotations
| EnsemblPlants:Solyc04g054410.2.1 | EnsemblPlantsGene:Solyc04g054410.2 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 |
| InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF4 | PFAM:PF04818 |
| PFscan:PS51391 | SEG:seg | SMART:SM00582 | SUPFAM:SSF48464 | UniParc:UPI000276562B | UniProt:K4BSJ6 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4:-:52477042..52483069
Molecular Weight (calculated)
56777.8 Da
IEP (calculated)
8.399
GRAVY (calculated)
-0.564
Length
513 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSILNEQTL TDKLSKLNTT QQCIETLSHW CIFHQDKAEL VVTTWGKQFH SSEMTKKVPL LYLANDILQN SKRKGNEFVI EFWKVLPAAL KEIVGTGDEH
101: GKNVVSRLVK IWEERKVFGS QTQSLKDVML GEELPPPLEL GKKRSRSVKI VKRDTRSIRT KLTVGGTAEK IVSALHLVVS EHSTEDEEMS KCKSAVHHVR
201: KMEKDVDVAL ARAKHPMRKT LSKELEEEER MLKQSIEKLK VVETNRLTLV SQLREALTEQ ESELENVRTQ IQVAEAQAGE ASNMRKYLDD EDYVGERKPL
301: GTTTSPDIYG KAGETSKKTA AAIAAEVADK LTASSSSQYI MSSVLSTFAA EAAKSAGLAK PSSYLTSNSY ISHPENTLSD SNALMSAQLP NPPPSNPYQS
401: MLAPHPTVHQ GQYHSLANPT SQQYLQPSAG MMSPYSYGSI AALPSVPPPP PPPAPPSYMT MTQQPLSMMQ QGAAAQQQQP PLPQQPPPPN FRPVTPVQPP
501: GMLYYSQPYH SQQ
101: GKNVVSRLVK IWEERKVFGS QTQSLKDVML GEELPPPLEL GKKRSRSVKI VKRDTRSIRT KLTVGGTAEK IVSALHLVVS EHSTEDEEMS KCKSAVHHVR
201: KMEKDVDVAL ARAKHPMRKT LSKELEEEER MLKQSIEKLK VVETNRLTLV SQLREALTEQ ESELENVRTQ IQVAEAQAGE ASNMRKYLDD EDYVGERKPL
301: GTTTSPDIYG KAGETSKKTA AAIAAEVADK LTASSSSQYI MSSVLSTFAA EAAKSAGLAK PSSYLTSNSY ISHPENTLSD SNALMSAQLP NPPPSNPYQS
401: MLAPHPTVHQ GQYHSLANPT SQQYLQPSAG MMSPYSYGSI AALPSVPPPP PPPAPPSYMT MTQQPLSMMQ QGAAAQQQQP PLPQQPPPPN FRPVTPVQPP
501: GMLYYSQPYH SQQ
001: MSSVFSDQIL IDKLAKLNSS QQSIETLSHW CIFNRSKAEL IVTTWEKQFH STEMDQKVPL LYLANDILQN SKRQGNEFVQ EFWNVLPKAL KDIVSQGDDN
101: GKSAVARVIK IWEERRVFGS RSKSLKDVML GEDVPLPLDI SKKRPRGSKS SKRESKSSRT KLASSGGVAE KIASAYHLVV AENSNEEAEM NKCKSAVKRI
201: RKMEKDVEEA CSTAKDNPKR KSLAKELEEE EYLLRQCIEK LKSVQGSRSS LVNQLKDALR EQESELDNLK AQIQVAKEQT EEAQNMQKRL NDEDYTSKQT
301: TAATTITETN DNTKSGQASK MTPASIAAML TASTSSHMIM QSVLSSFAAE ATKTSGLSKS ESTVPVSDTN ASFPSYNNSQ NQTPTTQGQY HVIPNPPPPQ
401: FLKPPVMNNP YAFGNIPLMP PGLPPPPPPP HLIGNQQPQI PQSNSAQQSQ QGPTFQPPGI MYYGAPHHS
101: GKSAVARVIK IWEERRVFGS RSKSLKDVML GEDVPLPLDI SKKRPRGSKS SKRESKSSRT KLASSGGVAE KIASAYHLVV AENSNEEAEM NKCKSAVKRI
201: RKMEKDVEEA CSTAKDNPKR KSLAKELEEE EYLLRQCIEK LKSVQGSRSS LVNQLKDALR EQESELDNLK AQIQVAKEQT EEAQNMQKRL NDEDYTSKQT
301: TAATTITETN DNTKSGQASK MTPASIAAML TASTSSHMIM QSVLSSFAAE ATKTSGLSKS ESTVPVSDTN ASFPSYNNSQ NQTPTTQGQY HVIPNPPPPQ
401: FLKPPVMNNP YAFGNIPLMP PGLPPPPPPP HLIGNQQPQI PQSNSAQQSQ QGPTFQPPGI MYYGAPHHS
Arabidopsis Description
At5g10060 [Source:UniProtKB/TrEMBL;Acc:Q8GUK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.