Factsheet for VIT_07s0031g01240.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g01240.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10060.1	VIT_07s0031g01240.t01	AT5G10060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43251	Soybean	nucleus	64.69	66.6
KRH59408	Soybean	nucleus	58.78	63.77
KRG97617	Soybean	mitochondrion	39.31	62.8
Solyc04g054410.2.1	Tomato	nucleus	61.07	62.38
PGSC0003DMT400033300	Potato	nucleus	52.86	60.61
AT5G65180.1	Thale cress	nucleus	47.71	56.95
CDX78365	Canola	nucleus	49.24	55.13
Bra006045.1-P	Field mustard	nucleus	48.85	55.05
CDY40076	Canola	nucleus	48.28	54.41
CDX81155	Canola	nucleus	47.9	54.21
AT5G10060.1	Thale cress	nucleus	48.47	54.16
KRH31254	Soybean	nucleus	56.49	53.62
GSMUA_Achr8P24850_001	Banana	cytosol	53.82	51.65
GSMUA_Achr4P09200_001	Banana	nucleus	54.39	50.35
TraesCS5B01G106400.1	Wheat	nucleus	47.71	48.83
EES12937	Sorghum	nucleus	49.05	48.77
TraesCS5A01G101800.1	Wheat	nucleus	47.14	48.24
TraesCS5D01G113800.2	Wheat	nucleus	47.14	48.24
HORVU5Hr1G027930.1	Barley	nucleus	45.61	46.68
Os04t0636700-01	Rice	nucleus	46.95	46.59
Zm00001d002140_P001	Maize	cytosol, endoplasmic reticulum, nucleus	49.05	44.7
VIT_14s0068g01560.t01	Wine grape	cytosol	34.73	34.73
VIT_08s0056g00770.t01	Wine grape	cytosol	43.13	33.83
VIT_17s0000g00860.t01	Wine grape	nucleus	31.68	30.97

Protein Annotations

Gene3D:1.25.40.90	EntrezGene:100257727	wikigene:100257727	MapMan:35.2	ProteinID:CCB47101	ProteinID:CCB47101.1
InterPro:CID_dom	ncoils:Coil	InterPro:ENTH_VHS	UniProt:F6H4N7	EMBL:FN595233	InterPro:IPR006569
InterPro:IPR008942	EntrezGene:LOC100257727	wikigene:LOC100257727	PFAM:PF04818	PFscan:PS51391	PANTHER:PTHR12460
PANTHER:PTHR12460:SF4	InterPro:RNA_pol_II-bd	SMART:SM00582	SUPFAM:SSF48464	UniParc:UPI0001983A57	ArrayExpress:VIT_07s0031g01240
EnsemblPlantsGene:VIT_07s0031g01240	EnsemblPlants:VIT_07s0031g01240.t01	RefSeq:XP_002276726	RefSeq:XP_002276726.1	SEG:seg	:

Description

No Description!

Coordinates

chr7:+:17325048..17330437

Molecular Weight (calculated)

58084.5 Da

IEP (calculated)

8.467

GRAVY (calculated)

-0.515

Length

524 amino acids

Sequence
(BLAST)

001: MNSVFSEQIL ADKLSKLNST QQCIETLSHW CIFHRSKAEL VVATWDKQFH SSEMAQKVPL LYLANDILQN SKRKGNEFVS EFWKVLPAAL KAVVEKGDDH
101: GKNVVSRLVH IWEERRVFGS RAQSLNDVML GEELPPPLEF SKKRSRSVKI VRRDMRSIRT KLSIGGSAEK IVSAFHVVLS DQSTEDAEMN KCKSAVHHVR
201: KMERDVDTAC LNAKDPKRKT LAKELEDEED VLKQCIEKLK LVEANREALV SQLKEALHEQ ESELENIRTQ MQVAHAQAEE ASNMRKRLND ENFTVAKPSH
301: ATSPLEANAK VGQASKRTAA DIAAEVADKL TASSSSQLIM TSVLSTFAAE EAKNAGLTKT STVSNSFTPM PSNSKPENSM PVSDPNVFMS TQTLTAPPNQ
401: PYQSVIIAPP TMQSQTPTSQ TQYHMLPNPP SQQYLQPSGG IMNPYGYGSI PPLPPGPPPP PSTLHMVNPM APLPQQQSIP LVQQPALLTR HQPMPLTQQP
501: PAPPSFRPLQ LPGMVYYGLP HHSQ

Best Arabidopsis Sequence Match ( AT5G10060.1 )
(BLAST)

001: MSSVFSDQIL IDKLAKLNSS QQSIETLSHW CIFNRSKAEL IVTTWEKQFH STEMDQKVPL LYLANDILQN SKRQGNEFVQ EFWNVLPKAL KDIVSQGDDN
101: GKSAVARVIK IWEERRVFGS RSKSLKDVML GEDVPLPLDI SKKRPRGSKS SKRESKSSRT KLASSGGVAE KIASAYHLVV AENSNEEAEM NKCKSAVKRI
201: RKMEKDVEEA CSTAKDNPKR KSLAKELEEE EYLLRQCIEK LKSVQGSRSS LVNQLKDALR EQESELDNLK AQIQVAKEQT EEAQNMQKRL NDEDYTSKQT
301: TAATTITETN DNTKSGQASK MTPASIAAML TASTSSHMIM QSVLSSFAAE ATKTSGLSKS ESTVPVSDTN ASFPSYNNSQ NQTPTTQGQY HVIPNPPPPQ
401: FLKPPVMNNP YAFGNIPLMP PGLPPPPPPP HLIGNQQPQI PQSNSAQQSQ QGPTFQPPGI MYYGAPHHS

Arabidopsis Description

At5g10060 [Source:UniProtKB/TrEMBL;Acc:Q8GUK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.