CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97617
KRH31254
KRH43251
KRH59408

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10060.1	KRG97617	AT5G10060.1	21798944
AT5G10060.1	KRH31254	AT5G10060.1	21798944
AT5G10060.1	KRH43251	AT5G10060.1	21798944
AT5G10060.1	KRH59408	AT5G10060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31254	Soybean	nucleus	71.95	42.75
KRH59408	Soybean	nucleus	61.28	41.61
KRH43251	Soybean	nucleus	62.8	40.47
VIT_07s0031g01240.t01	Wine grape	nucleus	62.8	39.31
AT5G65180.1	Thale cress	nucleus	51.22	38.27
Solyc04g054410.2.1	Tomato	nucleus	58.54	37.43
PGSC0003DMT400033300	Potato	nucleus	50.61	36.32
CDX81155	Canola	nucleus	49.7	35.21
Bra006045.1-P	Field mustard	nucleus	49.7	35.05
AT5G10060.1	Thale cress	nucleus	50.0	34.97
CDX78365	Canola	nucleus	49.7	34.83
CDY40076	Canola	nucleus	48.78	34.41
TraesCS5D01G113800.2	Wheat	nucleus	50.61	32.42
TraesCS5B01G106400.1	Wheat	nucleus	50.61	32.42
TraesCS5A01G101800.1	Wheat	nucleus	50.61	32.42
GSMUA_Achr8P24850_001	Banana	cytosol	53.66	32.23
EES12937	Sorghum	nucleus	51.52	32.07
HORVU5Hr1G027930.1	Barley	nucleus	50.0	32.03
GSMUA_Achr4P09200_001	Banana	nucleus	55.18	31.98
Os04t0636700-01	Rice	nucleus	49.7	30.87
Zm00001d002140_P001	Maize	cytosol, endoplasmic reticulum, nucleus	49.39	28.17
KRH64929	Soybean	nucleus	39.94	25.05
KRG94593	Soybean	nucleus	39.02	24.52
KRG94958	Soybean	nucleus	39.33	24.48
KRH06897	Soybean	nucleus	38.41	24.0
KRH57843	Soybean	mitochondrion	37.5	23.34

Protein Annotations

EMBL:ACUP02010803	EnsemblPlants:KRG97617	EnsemblPlantsGene:GLYMA_18G019800	Gene3D:1.25.40.90	InterPro:CID_dom	InterPro:ENTH_VHS
InterPro:IPR006569	InterPro:IPR008942	InterPro:RNA_pol_II-bd	ncoils:Coil	PANTHER:PTHR12460	PANTHER:PTHR12460:SF4
PFAM:PF04818	PFscan:PS51391	ProteinID:KRG97617	ProteinID:KRG97617.1	SEG:seg	SMART:SM00582
SUPFAM:SSF48464	UniParc:UPI0006ED9921	UniProt:A0A0R0F3F7	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr18:+:1467625..1470776

Molecular Weight (calculated)

36714.5 Da

IEP (calculated)

10.191

GRAVY (calculated)

-0.383

Length

328 amino acids

Sequence
(BLAST)

001: MASLNFGSIL VLRVNGRPIT PFNRKLTHRD GGTATLSHWC IFHRSKEELV VATWKKQFDK SEMIQRVLLL YLANDILQNC KRKGNEFVTE FWKVLPAALK
101: DVIKKGDDHG KRVVSTLIEI WEQRRVFGSQ ARNLKDLMLG EDAPPPLEFG KKRSRSVRIA KRDSHSIKSK LSIGGTAEKI VSAFHLVLSE QSAEDAEMSK
201: CKSSVQRVRK LEKDVDTACS VGTRGGGKCF ETMHRKLKLV EASRVALVSQ LKEALHEQES ELENVRTQMQ VAQAQVEEAC NMRKILDNED SSQKTSTGKS
301: AAVIAAEVAD KLACSCAKRL VIVKTIQN

Best Arabidopsis Sequence Match ( AT3G26990.1 )
(BLAST)

001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ

Arabidopsis Description

At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.