Factsheet for Bra006045.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006045.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10060.1	Bra006045.1-P	AT5G10060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78365	Canola	nucleus	93.12	92.52
CDX81155	Canola	nucleus	90.11	90.5
AT5G10060.1	Thale cress	nucleus	79.57	78.89
KRG97617	Soybean	mitochondrion	35.05	49.7
VIT_07s0031g01240.t01	Wine grape	nucleus	55.05	48.85
KRH43251	Soybean	nucleus	50.32	45.97
Solyc04g054410.2.1	Tomato	nucleus	50.32	45.61
KRH59408	Soybean	nucleus	46.45	44.72
PGSC0003DMT400033300	Potato	nucleus	43.44	44.2
KRH31254	Soybean	nucleus	50.11	42.21
EES12937	Sorghum	nucleus	45.81	40.42
GSMUA_Achr8P24850_001	Banana	cytosol	47.31	40.29
HORVU5Hr1G027930.1	Barley	nucleus	43.44	39.45
Os04t0636700-01	Rice	nucleus	44.73	39.39
TraesCS5D01G113800.2	Wheat	nucleus	43.23	39.26
TraesCS5A01G101800.1	Wheat	nucleus	43.01	39.06
GSMUA_Achr4P09200_001	Banana	nucleus	47.31	38.87
TraesCS5B01G106400.1	Wheat	nucleus	42.37	38.48
Zm00001d002140_P001	Maize	cytosol, endoplasmic reticulum, nucleus	45.38	36.7
Bra039100.1-P	Field mustard	nucleus, plastid	30.75	31.22
Bra025240.1-P	Field mustard	nucleus	31.83	29.31

Protein Annotations

EnsemblPlants:Bra006045.1	EnsemblPlants:Bra006045.1-P	EnsemblPlantsGene:Bra006045	Gene3D:1.25.40.90	InterPro:CID_dom	InterPro:ENTH_VHS
InterPro:IPR006569	InterPro:IPR008942	InterPro:RNA_pol_II-bd	ncoils:Coil	PANTHER:PTHR12460	PANTHER:PTHR12460:SF4
PFAM:PF04818	PFscan:PS51391	SEG:seg	SMART:SM00582	SUPFAM:SSF48464	UniParc:UPI000058E02B
UniProt:M4CPA7	MapMan:35.2	:	:	:	:

Description

AT5G10060 (E=5e-172) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65180.1); Has 4531 Blast hits to 4161 proteins in 412 species: Archae - 14; Bacteria - 404; Metazoa - 1999; Fungi - 666; Plants - 262; Viruses - 36; Other Eukaryotes - 1150 (source: NCBI BLink).

Coordinates

chrA03:-:1736758..1738707

Molecular Weight (calculated)

51532.9 Da

IEP (calculated)

8.201

GRAVY (calculated)

-0.731

Length

465 amino acids

Sequence
(BLAST)

001: MSTVFSEEIL IDKLAKLNST QQSIETLSHW CIFNRVKAEL IVTTWEKQFH STEMAQKVPL LYLANDILQN SKRQGNEFVQ EFWNVLPKAV KDIVSQGDDR
101: GKGVVSRLVK IWEDRRVFGS RSKNLRDVML GEDCPLPLDV SKKRPRGSKS SKRDRDSKSS RTKLSSGGGV AEKIASAYHL VVAENSNEEA EMSKCKSAVK
201: RIRKMEKDVE EACSTAKDNP KRESLAKELE EEEYLLRQCI EKLKSVQGSR TSLVNQLKDA LREQESELEN LEAQIQVAQE QTEEAQNMQK RLKDEDYAPK
301: PTTVAPGSVS TDNNGQSSKM TPASIAAMLT ASTSSHMIMQ SVLSSFAAEA TKTSGLSKSE STVPVSYNNS QNQTPATQGQ GQYHVIPNQP APPQPQFLNP
401: PVMNNPYGFG NIPLMPPGLP PPPPPPHMIG NQQAQSNSAQ QQQQPPQQGT FQPSGIMYYG APHHS

Best Arabidopsis Sequence Match ( AT5G10060.1 )
(BLAST)

001: MSSVFSDQIL IDKLAKLNSS QQSIETLSHW CIFNRSKAEL IVTTWEKQFH STEMDQKVPL LYLANDILQN SKRQGNEFVQ EFWNVLPKAL KDIVSQGDDN
101: GKSAVARVIK IWEERRVFGS RSKSLKDVML GEDVPLPLDI SKKRPRGSKS SKRESKSSRT KLASSGGVAE KIASAYHLVV AENSNEEAEM NKCKSAVKRI
201: RKMEKDVEEA CSTAKDNPKR KSLAKELEEE EYLLRQCIEK LKSVQGSRSS LVNQLKDALR EQESELDNLK AQIQVAKEQT EEAQNMQKRL NDEDYTSKQT
301: TAATTITETN DNTKSGQASK MTPASIAAML TASTSSHMIM QSVLSSFAAE ATKTSGLSKS ESTVPVSDTN ASFPSYNNSQ NQTPTTQGQY HVIPNPPPPQ
401: FLKPPVMNNP YAFGNIPLMP PGLPPPPPPP HLIGNQQPQI PQSNSAQQSQ QGPTFQPPGI MYYGAPHHS

Arabidopsis Description

At5g10060 [Source:UniProtKB/TrEMBL;Acc:Q8GUK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.