Factsheet for Bra025240.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001896.1-P
Bra023780.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26990.1	Bra001896.1-P	AT3G22960.1	21798944
AT3G26990.1	Bra023780.1-P	AT3G22960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13671	Canola	nucleus	93.47	92.91
Bra039100.1-P	Field mustard	nucleus, plastid	64.95	71.62
AT3G26990.1	Thale cress	nucleus	72.08	70.96
GSMUA_Achr8P17800_001	Banana	cytosol	22.57	56.16
GSMUA_Achr4P15940_001	Banana	cytosol	20.99	52.48
PGSC0003DMT400052044	Potato	nucleus	48.51	48.23
KRG94593	Soybean	nucleus	49.31	47.7
KRH06897	Soybean	nucleus	49.11	47.24
Solyc02g094360.2.1	Tomato	nucleus	48.32	47.1
VIT_17s0000g00860.t01	Wine grape	nucleus	45.74	43.1
GSMUA_Achr11P...	Banana	nucleus	41.19	39.92
GSMUA_Achr10P...	Banana	nucleus	40.79	39.39
HORVU3Hr1G095600.3	Barley	extracellular	11.29	38.78
Bra006045.1-P	Field mustard	nucleus	29.31	31.83
Os01t0925000-02	Rice	nucleus	28.32	29.18
TraesCS3A01G437300.1	Wheat	nucleus	25.15	26.96
TraesCS3D01G429500.1	Wheat	nucleus	24.36	26.8
TraesCS3B01G471400.1	Wheat	endoplasmic reticulum	25.74	25.9
EES04124	Sorghum	nucleus	25.54	25.54
Zm00001d011975_P002	Maize	nucleus	24.75	24.51
HORVU3Hr1G095520.4	Barley	cytosol, nucleus	14.26	19.57
Zm00001d042291_P002	Maize	mitochondrion, nucleus	16.63	18.96

Protein Annotations

EnsemblPlants:Bra025240.1	EnsemblPlants:Bra025240.1-P	EnsemblPlantsGene:Bra025240	Gene3D:1.25.40.90	InterPro:CID_dom	InterPro:ENTH_VHS
InterPro:IPR006569	InterPro:IPR008942	InterPro:RNA_pol_II-bd	ncoils:Coil	PANTHER:PTHR12460	PANTHER:PTHR12460:SF9
PFAM:PF04818	PFscan:PS51391	SEG:seg	SMART:SM00582	SUPFAM:SSF48464	UniParc:UPI000253F61F
UniProt:M4E8Y4	MapMan:35.2	:	:	:	:

Description

AT3G26990 (E=3e-201) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10060.1); Has 815 Blast hits to 806 proteins in 138 species: Archae - 0; Bacteria - 10; Metazoa - 490; Fungi - 159; Plants - 81; Viruses - 1; Other Eukaryotes - 74 (source: NCBI BLink).

Coordinates

chrA06:-:22609261..22612014

Molecular Weight (calculated)

55350.3 Da

IEP (calculated)

7.071

GRAVY (calculated)

-0.500

Length

505 amino acids

Sequence
(BLAST)

001: MGSSFNAQIL VEKLSKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CSPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDVIENGDDF
101: ARKAARRLVN IWEERKVFGS HGQILKEEIL GKQPENGARN GALVPLKLKQ ASGTSLERVV SAVEALHGVQ IDEDVIVGKC TNAAGYLERA TQEVEKDLSS
201: GHTPGPAVVK EVQGQHAILR DCIEQLGAVE TSRISLISHL REALQEQELK LEQVRNHLQI ARFQSDRTGD LCKQLLDHGI SSQPPATEGE ASKVSPATSA
301: PQSFTHIDVQ QSAPVMFASN PPNQSVVDPR KTAAAAVVAR LTASTSSAEM LSHVLSSLAS ERIIGNNPPA VTGTPSSEEY PPEKRPKLQN HDQSYLQQLQ
401: QQNAATTSTA TTTTPLLLPP PPPPYQLQPQ YLQPLQPPGP VNQTPFNYTI ATTSGPTQQQ GQWVHGLTPL PTTSAPSDNS YQKFQGQDGF YGINPSVSMT
501: PVTRQ

Best Arabidopsis Sequence Match ( AT3G26990.1 )
(BLAST)

001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ

Arabidopsis Description

At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.