Factsheet for GSMUA_Achr11P08480_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P17520_001
GSMUA_Achr4P21110_001
GSMUA_Achr4P28510_001
GSMUA_Achr7P16760_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26990.1	GSMUA_Achr2P17520_001	AT3G22960.1	21798944
AT3G26990.1	GSMUA_Achr4P21110_001	AT3G22960.1	21798944
AT3G26990.1	GSMUA_Achr4P28510_001	AT3G22960.1	21798944
AT3G26990.1	GSMUA_Achr7P16760_001	AT3G22960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P17800_001	Banana	cytosol	25.34	65.02
GSMUA_Achr4P15940_001	Banana	cytosol	23.8	61.39
GSMUA_Achr10P...	Banana	nucleus	55.85	55.64
KRG94593	Soybean	nucleus	46.07	45.98
VIT_14s0068g01560.t01	Wine grape	cytosol	44.72	44.47
KRH06897	Soybean	nucleus	44.72	44.38
VIT_17s0000g00860.t01	Wine grape	nucleus	45.49	44.22
AT3G26990.1	Thale cress	nucleus	41.65	42.3
Bra039100.1-P	Field mustard	nucleus, plastid	36.66	41.7
PGSC0003DMT400052044	Potato	nucleus	40.5	41.54
CDY20069	Canola	nucleus, plastid	36.47	41.21
Bra025240.1-P	Field mustard	nucleus	39.92	41.19
CDY13671	Canola	nucleus	39.54	40.55
Solyc02g094360.2.1	Tomato	nucleus	40.12	40.35
CDY00175	Canola	mitochondrion	37.04	36.48
GSMUA_Achr11P...	Banana	cytosol	37.04	36.42
CDY52407	Canola	plastid	39.92	35.68
GSMUA_Achr4P02300_001	Banana	nucleus	36.47	34.11
GSMUA_Achr8P24850_001	Banana	cytosol	34.36	32.78
GSMUA_Achr4P09200_001	Banana	nucleus	33.97	31.27

Protein Annotations

EnsemblPlants:GSMUA_Achr11P08480_001	EnsemblPlants:GSMUA_Achr11T08480_001	EnsemblPlantsGene:GSMUA_Achr11G08480_001	Gene3D:1.25.40.90	InterPro:CID_dom	InterPro:ENTH_VHS
InterPro:IPR006569	InterPro:IPR008942	InterPro:RNA_pol_II-bd	ncoils:Coil	PANTHER:PTHR12460	PANTHER:PTHR12460:SF9
PFAM:PF04818	PFscan:PS51391	SEG:seg	SMART:SM00582	SUPFAM:SSF48464	UniParc:UPI00029492A1
UniProt:M0RQH8	MapMan:35.2	:	:	:	:

Description

Putative protein of unknown function, DUF618 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G08480_001]

Coordinates

chr11:+:6574373..6584729

Molecular Weight (calculated)

57513.0 Da

IEP (calculated)

5.588

GRAVY (calculated)

-0.487

Length

521 amino acids

Sequence
(BLAST)

001: MNGSFNGQIL VDKLAKLNNT QQSIETLSHW CIFHMNKATQ VVETWERQFY CSPREQRVSF LYLANDILQN SRRKGLEFIN EFWKVLPDAL NDVCGNGDEF
101: GRKTVLRLVD IWDERKVFGS RGQILKEEIS GRRLDNGNKN VKAIIYKSKQ SSEFLEKIIS SYDHVCDEEA LFRKCQSAIS IVDKLEKELG SDIEYGSING
201: SEVMGELQMQ HHMLLECIEQ LKAAELSRAT LISYLKEALH EQEIKIEQVR HQLQEAESQY ERATVASAQL NGEQPPAEQR TKESSLAFSE TSPGFAPEAT
301: AGSSDEAQIT STRCTQEEPL TENNSSHSES EHRRTAAAEV AAKLTASASS AQMLCHVLSS LASEGVIGQA NKEDFSSDNK RLKTENSVPS HVLLLQPPLQ
401: PPLPSLPHPQ LQHQLPLLPP GTHPSPIVEP LPSTSTSLPS AQPPPPPLIT TQFMPSAAGP MTGIPYVYGS ALPPLPNYPP MFGIHLGPSA PNPFHNVQAS
501: EGPNTFGQPP LPAPPPPLTR Q

Best Arabidopsis Sequence Match ( AT3G26990.1 )
(BLAST)

001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ

Arabidopsis Description

At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.