Factsheet for GSMUA_Achr4P02300_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	65.89	69.25
KRH64929	Soybean	nucleus	47.22	50.29
KRG94958	Soybean	nucleus	47.58	50.28
GSMUA_Achr8P17800_001	Banana	cytosol	17.41	47.78
GSMUA_Achr4P15940_001	Banana	cytosol	17.24	47.52
Solyc11g012740.1.1	Tomato	nucleus	45.06	47.36
KRH57843	Soybean	mitochondrion	43.45	45.92
Os11t0130100-01	Rice	cytosol, nucleus	37.16	44.04
Os12t0126800-01	Rice	nucleus	46.14	43.93
TraesCS5B01G139700.1	Wheat	nucleus	45.96	43.1
HORVU4Hr1G026870.2	Barley	nucleus	45.06	42.91
VIT_08s0056g00770.t01	Wine grape	cytosol	51.35	42.81
TraesCS5A01G141400.1	Wheat	nucleus	45.6	42.76
TraesCS5D01G150900.1	Wheat	nucleus	45.42	42.74
TraesCS4B01G128200.1	Wheat	nucleus	44.34	42.44
TraesCS4D01G124400.1	Wheat	nucleus	44.17	42.34
TraesCS4A01G188700.1	Wheat	nucleus	43.81	42.0
EES16544	Sorghum	nucleus	44.34	41.94
EES09184	Sorghum	nucleus	44.52	41.89
Zm00001d044657_P002	Maize	nucleus	43.99	41.81
Zm00001d005013_P001	Maize	nucleus, plastid	32.32	40.54
HORVU0Hr1G010590.1	Barley	cytosol	45.6	40.38
Zm00001d023272_P009	Maize	nucleus	43.63	40.17
Zm00001d005012_P002	Maize	nucleus, plastid	30.34	39.95
Zm00001d052407_P004	Maize	nucleus	42.91	38.61
GSMUA_Achr8P24850_001	Banana	cytosol	37.16	37.91
GSMUA_Achr4P09200_001	Banana	nucleus	38.24	37.63
GSMUA_Achr10P...	Banana	nucleus	34.29	36.52
GSMUA_Achr11P...	Banana	nucleus	34.11	36.47

Protein Annotations

EnsemblPlants:GSMUA_Achr4P02300_001	EnsemblPlants:GSMUA_Achr4T02300_001	EnsemblPlantsGene:GSMUA_Achr4G02300_001	Gene3D:1.25.40.90	InterPro:CID_dom	InterPro:ENTH_VHS
InterPro:IPR006569	InterPro:IPR008942	InterPro:RNA_pol_II-bd	ncoils:Coil	PANTHER:PTHR12460	PANTHER:PTHR12460:SF9
PFAM:PF04818	PFscan:PS51391	SEG:seg	SMART:SM00582	SUPFAM:SSF48464	UniParc:UPI00029648BA
UniProt:M0SKE7	MapMan:35.2	:	:	:	:

Description

Putative protein of unknown function, DUF618 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G02300_001]

Coordinates

chr4:+:2042743..2058304

Molecular Weight (calculated)

60690.3 Da

IEP (calculated)

7.940

GRAVY (calculated)

-0.443

Length

557 amino acids

Sequence
(BLAST)

001: MNEAFGNQAL VEKLSKLNNS QQSIESLSNW CIVHRKKSKE IVETWDQAFN GSPREKRVPF LYLANDILQN SRRKGSEFVN EFWKVLPGCL KNVYENGEDH
101: GKKVVNRLVE IWDERKVFGS RGRSLKDEIL GNVPVPVSDN GKSSNPIKLV RKDANSVRIK LAIGEMPEKI VTAYQSVLDE HSGEDTALSK CKDAVQVLER
201: LEIDIDVACK QGNQQESTFI DNLQEQEIVL KQCIEQLEIA KATRATLITQ LMEAIKEQEL KLELIHSQLQ IAHSQTEHAS NMRRRLGLAA GTNGFGPTTT
301: LPLVNFASEA IPATEPNPPV SITHLQPLQP VTSFVSSLSS AEEDHKKAAA AVAAKLAASS SSAQVLSSIL SSLAAEEAAS MNNSLSSRVR PGSPPVFPLE
401: KRPRLENTIS TTDMGKTSYF GQAQHQQQQS IPLVLPQTSA ASIQLPQSNQ VPPTFTPPLP PLPPPPMQQY VQTSGGTMSV PPYGFVGRSL PSPPPLLSHV
501: SAGLARPGGP LPPPPPPPPP QQQQPPPQLQ STSMGFYQSP GIGFYGQPQT APTAQRQ

Best Arabidopsis Sequence Match ( AT3G26990.1 )
(BLAST)

001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ

Arabidopsis Description

At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.