Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G141400.1 | Wheat | nucleus | 95.29 | 95.29 |
| TraesCS5D01G150900.1 | Wheat | nucleus | 90.24 | 90.54 |
| HORVU0Hr1G010590.1 | Barley | cytosol | 86.7 | 81.88 |
| TraesCS4B01G128200.1 | Wheat | nucleus | 66.5 | 67.87 |
| Os12t0126800-01 | Rice | nucleus | 66.16 | 67.18 |
| Os11t0130100-01 | Rice | cytosol, nucleus | 52.53 | 66.38 |
| EES16544 | Sorghum | nucleus | 62.29 | 62.82 |
| Zm00001d044657_P002 | Maize | nucleus | 61.45 | 62.29 |
| EES09184 | Sorghum | nucleus | 59.76 | 59.97 |
| Zm00001d005012_P002 | Maize | nucleus, plastid | 42.26 | 59.34 |
| Zm00001d005013_P001 | Maize | nucleus, plastid | 44.28 | 59.23 |
| Zm00001d023272_P009 | Maize | nucleus | 57.41 | 56.36 |
| Zm00001d052407_P004 | Maize | nucleus | 57.41 | 55.09 |
| GSMUA_Achr11P... | Banana | cytosol | 43.1 | 48.3 |
| GSMUA_Achr4P02300_001 | Banana | nucleus | 43.1 | 45.96 |
| KRG94958 | Soybean | nucleus | 37.37 | 42.13 |
| KRH64929 | Soybean | nucleus | 36.7 | 41.68 |
| KRH57843 | Soybean | mitochondrion | 34.18 | 38.52 |
| Solyc11g012740.1.1 | Tomato | nucleus | 33.0 | 36.98 |
| TraesCS5B01G106400.1 | Wheat | nucleus | 30.64 | 35.55 |
| VIT_08s0056g00770.t01 | Wine grape | cytosol | 38.38 | 34.13 |
| TraesCS3B01G471400.1 | Wheat | endoplasmic reticulum | 19.36 | 22.91 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G139700.1 | EnsemblPlantsGene:TraesCS5B01G139700 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 |
| InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF9 | PFAM:PF04818 |
| PFscan:PS51391 | SEG:seg | SMART:SM00582 | SUPFAM:SSF48464 | TIGR:cd03562 | MapMan:35.2 |
Description
No Description!
Coordinates
chr5B:+:263515364..263524119
Molecular Weight (calculated)
63490.2 Da
IEP (calculated)
7.453
GRAVY (calculated)
-0.493
Length
594 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAKADAKA EPTGGGGGGG GGSFTEERLS EKLNKLSSSA ASIQTALSNW CIFHRKRARR VVDTWQRQFN NATTDKKVSF LYLSNDILQN SKRKGGEFVN
101: EFWRILPGLL KDFYENGGQD GKKVVARLIG IWDERKVFGT RSESLKDILG DNPPPLNNNS TTSNPTSKPS SVSKSSQRDT GPIIKKLTVS GMPEKIITAY
201: QSVLDQYFDE DTALNKCKIT VSVLEKMNKD VDEACTNDIQ QVSSLISNLQ EQEAILKQCI EQLESVDAAR ITLISNLKEA LSEEEKKSEL LRNQLQVGRA
301: EAEHAAQLRQ RFGGAHATNG AWSSSSTLMT TIPSEQTAAM MQNAAISPIT PQFQPPHPAI LLSATATAAD DEPKKTAAAM ADKLASLASP EQVLSSILAS
401: LAAEQAASMN GGSPSVELSE GPPGFQIPKR PRIENPTQTG DMGAPLFFGQ LPQAAQQNGA APTSLGGMQS SMQANQAPGA FPPPPPPLPP MLPPLLQQFS
501: QNGGGMFGMG PFGMLASSMP PPLPNMLPPG YPRPSGPPPP PPLSPAQNQS QTQQQQQSPQ APQQSPTSTG FFPTPGIGFF PPVQMQQSPS VQRQ
101: EFWRILPGLL KDFYENGGQD GKKVVARLIG IWDERKVFGT RSESLKDILG DNPPPLNNNS TTSNPTSKPS SVSKSSQRDT GPIIKKLTVS GMPEKIITAY
201: QSVLDQYFDE DTALNKCKIT VSVLEKMNKD VDEACTNDIQ QVSSLISNLQ EQEAILKQCI EQLESVDAAR ITLISNLKEA LSEEEKKSEL LRNQLQVGRA
301: EAEHAAQLRQ RFGGAHATNG AWSSSSTLMT TIPSEQTAAM MQNAAISPIT PQFQPPHPAI LLSATATAAD DEPKKTAAAM ADKLASLASP EQVLSSILAS
401: LAAEQAASMN GGSPSVELSE GPPGFQIPKR PRIENPTQTG DMGAPLFFGQ LPQAAQQNGA APTSLGGMQS SMQANQAPGA FPPPPPPLPP MLPPLLQQFS
501: QNGGGMFGMG PFGMLASSMP PPLPNMLPPG YPRPSGPPPP PPLSPAQNQS QTQQQQQSPQ APQQSPTSTG FFPTPGIGFF PPVQMQQSPS VQRQ
001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
Arabidopsis Description
At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.