Factsheet for VIT_08s0056g00770.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64929	Soybean	nucleus	48.8	62.33
KRG94958	Soybean	nucleus	48.05	60.91
KRH57843	Soybean	mitochondrion	45.36	57.5
Solyc11g012740.1.1	Tomato	nucleus	43.86	55.28
GSMUA_Achr4P02300_001	Banana	nucleus	42.81	51.35
GSMUA_Achr11P...	Banana	cytosol	39.97	50.38
VIT_07s0031g01240.t01	Wine grape	nucleus	33.83	43.13
VIT_14s0068g01560.t01	Wine grape	cytosol	31.29	39.89
TraesCS4B01G128200.1	Wheat	nucleus	34.73	39.86
HORVU4Hr1G026870.2	Barley	nucleus	34.88	39.83
TraesCS4D01G124400.1	Wheat	nucleus	34.28	39.41
TraesCS4A01G188700.1	Wheat	nucleus	34.13	39.24
TraesCS5D01G150900.1	Wheat	nucleus	34.73	39.19
TraesCS5A01G141400.1	Wheat	nucleus	34.28	38.55
Zm00001d044657_P002	Maize	nucleus	33.68	38.4
TraesCS5B01G139700.1	Wheat	nucleus	34.13	38.38
VIT_17s0000g00860.t01	Wine grape	nucleus	30.69	38.25
EES16544	Sorghum	nucleus	33.68	38.2
Os12t0126800-01	Rice	nucleus	33.23	37.95
HORVU0Hr1G010590.1	Barley	cytosol	35.33	37.52
EES09184	Sorghum	nucleus	33.08	37.33
Os11t0130100-01	Rice	cytosol, nucleus	25.45	36.17
Zm00001d023272_P009	Maize	nucleus	32.48	35.87
Zm00001d052407_P004	Maize	nucleus	32.78	35.38
Zm00001d005012_P002	Maize	nucleus, plastid	21.86	34.52
Zm00001d005013_P001	Maize	nucleus, plastid	22.75	34.23

Protein Annotations

Gene3D:1.25.40.90	EntrezGene:100250127	wikigene:100250127	MapMan:35.2	ProteinID:CCB55975	ProteinID:CCB55975.1
InterPro:CID_dom	InterPro:ENTH_VHS	UniProt:F6HMV0	EMBL:FN595995	InterPro:IPR006569	InterPro:IPR008942
EntrezGene:LOC100250127	wikigene:LOC100250127	PFAM:PF04818	PFscan:PS51391	PANTHER:PTHR12460	PANTHER:PTHR12460:SF9
InterPro:RNA_pol_II-bd	SMART:SM00582	SUPFAM:SSF48464	TIGR:TC69748	UniParc:UPI0002108266	ArrayExpress:VIT_08s0056g00770
EnsemblPlantsGene:VIT_08s0056g00770	EnsemblPlants:VIT_08s0056g00770.t01	unigene:Vvi.24661	unigene:Vvi.7093	RefSeq:XP_002267006	RefSeq:XP_002267006.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:1149393..1205685

Molecular Weight (calculated)

73109.0 Da

IEP (calculated)

9.511

GRAVY (calculated)

-0.416

Length

668 amino acids

Sequence
(BLAST)

001: MGSTLFKVEK KVFEVKFEGI HGGPWISVTE GFQGKAFSVA FEEEEVIWIM EQLKKAMVLV GYRGFIRKFR GKSRTLLLEG LQDQELSHLY SLLDCCRICK
101: KLLNSRMSND VFDGQLLAEK LSKLNNSQQS IESLSRWCIS HRKKAKQIVE TWDKLFNSSQ KEQCVSFLYL ANDILQNSRR KGSEFVNEFW KVLPLALKHV
201: YDNGDEYGKK AVSRLVDIWE ERKVFGSRGQ GLKDEMLGKS PPLLVSNGKN SNPIKIVKRD SQSVRIKLSI GGMPEKIVTA FQTVHDEQVN EEAVLNKCKT
301: AVQHVGKLEV DAGNTSGEGN QQRAALVDEL KEQENILQQC VVQLESSEAT RAALVSQLKE AVLDQESKLG LVRAQLQVAR GRIEQAINMR QRLTSPTVAG
401: PQTIRMNPQT EAPMAVEPNM PSVQATTTPP KAPLTQPVIS FAPLKTTEED SKKAAAAAVA AKLAASTSSA QMLTSVLSSL VAEEAASNGG LKSSGFASIF
501: SPEKRPRLEK PMPISDGNNS DAGSASYFTP VQQQSMANMP LAPPTSVPPM SQANQMQAPF PPPPPPPPPL PLVNPPAKQY VQSSGMMVGV MPYGYGTTSL
601: PPPPPMLSHV PMGLSAPAPQ PPQQLQSPQL QQQQQSQQPA TGGGYYRPPG IAFYGQSHQP TPPPVPRQ

Best Arabidopsis Sequence Match ( AT5G65180.1 )
(BLAST)

001: MSSPFSEEIL IDNLAKLNST QQSIQTLSQW CIVHRSEAEL VVTTWEKQFH STQIGQKVPL LYLANDILQN SKRQGNEFVQ EFWKVLPGAL KDIVSLGDDY
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS

Arabidopsis Description

ENTH/VHS family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.