Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 6
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH64929 | Soybean | nucleus | 50.38 | 51.05 |
| KRG94958 | Soybean | nucleus | 50.0 | 50.28 |
| KRH57843 | Soybean | mitochondrion | 49.43 | 49.72 |
| GSMUA_Achr11P... | Banana | cytosol | 45.66 | 45.66 |
| GSMUA_Achr4P02300_001 | Banana | nucleus | 47.36 | 45.06 |
| VIT_08s0056g00770.t01 | Wine grape | cytosol | 55.28 | 43.86 |
| TraesCS4B01G128200.1 | Wheat | nucleus | 36.79 | 33.51 |
| TraesCS4A01G188700.1 | Wheat | nucleus | 36.6 | 33.39 |
| HORVU4Hr1G026870.2 | Barley | nucleus | 36.79 | 33.33 |
| EES16544 | Sorghum | nucleus | 36.98 | 33.28 |
| TraesCS4D01G124400.1 | Wheat | nucleus | 36.42 | 33.22 |
| TraesCS5B01G139700.1 | Wheat | nucleus | 36.98 | 33.0 |
| Os12t0126800-01 | Rice | nucleus | 36.42 | 32.99 |
| Zm00001d044657_P002 | Maize | nucleus | 36.42 | 32.94 |
| TraesCS5A01G141400.1 | Wheat | nucleus | 36.79 | 32.83 |
| TraesCS5D01G150900.1 | Wheat | nucleus | 36.42 | 32.6 |
| EES09184 | Sorghum | nucleus | 36.23 | 32.43 |
| Solyc04g054410.2.1 | Tomato | nucleus | 31.32 | 32.36 |
| Os11t0130100-01 | Rice | cytosol, nucleus | 28.68 | 32.34 |
| Zm00001d023272_P009 | Maize | nucleus | 36.23 | 31.74 |
| Solyc02g094360.2.1 | Tomato | nucleus | 30.75 | 31.47 |
| Zm00001d052407_P004 | Maize | nucleus | 36.23 | 31.02 |
| HORVU0Hr1G010590.1 | Barley | cytosol | 36.79 | 31.0 |
| Zm00001d005012_P002 | Maize | nucleus, plastid | 24.53 | 30.73 |
| Zm00001d005013_P001 | Maize | nucleus, plastid | 25.66 | 30.63 |
Protein Annotations
| EnsemblPlants:Solyc11g012740.1.1 | EnsemblPlantsGene:Solyc11g012740.1 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 |
| InterPro:IPR008942 | InterPro:RNA_pol_II-bd | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF9 | PFAM:PF04818 | PFscan:PS51391 |
| SEG:seg | SMART:SM00582 | SUPFAM:SSF48464 | UniParc:UPI000276A108 | UniProt:K4D678 | MapMan:35.2 |
Description
No Description!
Coordinates
chr11:-:5494026..5508912
Molecular Weight (calculated)
57620.6 Da
IEP (calculated)
9.114
GRAVY (calculated)
-0.444
Length
530 amino acids
Sequence
(BLAST)
(BLAST)
001: MYPFSLSRWC ISYRKKAKQI VETWDKSFRS AQREQRVSFL YLANDIIQNS RRKGSEFVNE FWKVLPASLK KVNESGDGSV KKVASRLVNI WEERKVFGSK
101: GQNLKDEVLG KSPAPSESKG KSSNPIEVVK KDAHSVRIKM AVGCTPEKIV TAFQLVHDEN VNEEDALNKC KHSVFCVGEM ENDIENRQGN LQGSELMDKL
201: LEQENILQEC ISHFENAESL RITLISLLKD ALQDQESKLE LLRSGMQVAC GQIELVKNAR RRLTSPSVAA PPVNTGILPI EVTRTTEPTP PSVQLINIPP
301: LPPPPNPVTS FTNSKSNEEE SKSSAAAAVA AKLAASTSSA QMLTSVLSSL VAEEAASLSS GLKSTGFTSS LPFASPEKRL KLDKPMTFSD MNSSERGSST
401: YFTSSQQLLT SIPLAPSSAM QSVSQPNQIQ APLPPPPPPP PSLHPANSPA SQLVQSTGMM MGVMPYGYSA GLQQPVSSQI AMGLRPPPPP PQQAQLQSQQ
501: QPANSGFYRP SGIGFYGQAH QQTAPAAPRQ
101: GQNLKDEVLG KSPAPSESKG KSSNPIEVVK KDAHSVRIKM AVGCTPEKIV TAFQLVHDEN VNEEDALNKC KHSVFCVGEM ENDIENRQGN LQGSELMDKL
201: LEQENILQEC ISHFENAESL RITLISLLKD ALQDQESKLE LLRSGMQVAC GQIELVKNAR RRLTSPSVAA PPVNTGILPI EVTRTTEPTP PSVQLINIPP
301: LPPPPNPVTS FTNSKSNEEE SKSSAAAAVA AKLAASTSSA QMLTSVLSSL VAEEAASLSS GLKSTGFTSS LPFASPEKRL KLDKPMTFSD MNSSERGSST
401: YFTSSQQLLT SIPLAPSSAM QSVSQPNQIQ APLPPPPPPP PSLHPANSPA SQLVQSTGMM MGVMPYGYSA GLQQPVSSQI AMGLRPPPPP PQQAQLQSQQ
501: QPANSGFYRP SGIGFYGQAH QQTAPAAPRQ
001: MSSPFSEEIL IDNLAKLNST QQSIQTLSQW CIVHRSEAEL VVTTWEKQFH STQIGQKVPL LYLANDILQN SKRQGNEFVQ EFWKVLPGAL KDIVSLGDDY
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS
Arabidopsis Description
ENTH/VHS family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJP7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.