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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
  • plastid 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:plastid
PProwler:mitochondrion
PTS1:peroxisome
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc09g082970.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G26990.1 Solyc09g082970.2.1 AT3G22960.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400052044 Potato nucleus 88.03 89.76
VIT_14s0068g01560.t01 Wine grape cytosol 58.11 57.44
GSMUA_Achr8P17800_001 Banana cytosol 22.39 57.14
GSMUA_Achr4P15940_001 Banana cytosol 20.66 52.97
KRH06897 Soybean nucleus 52.51 51.81
KRG94593 Soybean nucleus 51.93 51.53
CDY13671 Canola nucleus 48.07 49.02
Bra025240.1-P Field mustard nucleus 47.1 48.32
Bra039100.1-P Field mustard nucleus, plastid 40.73 46.07
CDY20069 Canola nucleus, plastid 40.93 45.99
AT3G26990.1 Thale cress nucleus 44.02 44.44
CDY52407 Canola plastid 47.88 42.54
CDY00175 Canola mitochondrion 41.51 40.64
GSMUA_Achr11P... Banana nucleus 40.35 40.12
GSMUA_Achr10P... Banana nucleus 40.35 39.96
HORVU3Hr1G095600.3 Barley extracellular 10.81 38.1
Solyc11g012740.1.1 Tomato nucleus 31.47 30.75
Solyc04g054410.2.1 Tomato nucleus 30.12 30.41
TraesCS3D01G429500.1 Wheat nucleus 24.9 28.1
TraesCS3A01G437300.1 Wheat nucleus 25.29 27.81
Os01t0925000-02 Rice nucleus 26.25 27.76
EES04124 Sorghum nucleus 27.03 27.72
Zm00001d011975_P002 Maize nucleus 26.64 27.06
TraesCS3B01G471400.1 Wheat endoplasmic reticulum 25.29 26.1
HORVU3Hr1G095520.4 Barley cytosol, nucleus 15.44 21.74
Zm00001d042291_P002 Maize mitochondrion, nucleus 17.37 20.32
Protein Annotations
EnsemblPlants:Solyc02g094360.2.1EnsemblPlantsGene:Solyc02g094360.2Gene3D:1.25.40.90InterPro:CID_domInterPro:ENTH_VHSInterPro:IPR006569
InterPro:IPR008942InterPro:RNA_pol_II-bdncoils:CoilPANTHER:PTHR12460PANTHER:PTHR12460:SF9PFAM:PF04818
PFscan:PS51391SEG:segSMART:SM00582SUPFAM:SSF48464UniParc:UPI0002768AB0UniProt:K4BDN1
MapMan:35.2:::::
Description
No Description!
Coordinates
chr2:-:54904764..54914017
Molecular Weight (calculated)
56447.3 Da
IEP (calculated)
6.512
GRAVY (calculated)
-0.442
Length
518 amino acids
Sequence
(BLAST)
001: MGSTFNTQIL VDKLEMLNSS QQSIETLSHW CIFHMTKAKQ VVETWAQQFH CSPREQRLSF LYLANDILQN SRRKGAEFVA EFWKVLPDAL RDVIENGNEF
101: GRNAALRLIS IWDERKVFGS RGQILKEEFA GKHVGNGKHS GGKVRNSAGD ALDKIVSSYQ ILYGGQIDED AILSRAKNAI SCVAKIDKKI GSDLNPGHLN
201: GSGIVDELKG QHTILKDCVE QLTTVESSRV NLISHLREVL QEQEYKLDQV RNHLQAAQSH ADQVGSICGQ LLNFDGNGQI LAEQNIKEAN TSQAPHSFIS
301: GNREQSAPVM YTRQVSYEKS GNLEEDMKSA AAAVAAKLTA STSSAQMLSY VLSSLASEGV IGNSTKESLH DNQPEKRMKL ENDGSCYAPS QNPQEAVTFF
401: SQPNSVQHNL ASTGRESTPT EPPPLPSSPP PLAPLPPMQP YPAGQIIQTS GQLPSSTFVY ATSQQVQPAS TLGGFVPPVN GISPFTYPAT IGYQGYSSDS
501: SLYSHQSSSL PMAPVSRP
Best Arabidopsis Sequence Match ( AT3G26990.1 )
(BLAST)
001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
Arabidopsis Description
At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.