Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Solyc09g082970.2.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G26990.1 | Solyc09g082970.2.1 | AT3G22960.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400052044 | Potato | nucleus | 88.03 | 89.76 |
VIT_14s0068g01560.t01 | Wine grape | cytosol | 58.11 | 57.44 |
GSMUA_Achr8P17800_001 | Banana | cytosol | 22.39 | 57.14 |
GSMUA_Achr4P15940_001 | Banana | cytosol | 20.66 | 52.97 |
KRH06897 | Soybean | nucleus | 52.51 | 51.81 |
KRG94593 | Soybean | nucleus | 51.93 | 51.53 |
CDY13671 | Canola | nucleus | 48.07 | 49.02 |
Bra025240.1-P | Field mustard | nucleus | 47.1 | 48.32 |
Bra039100.1-P | Field mustard | nucleus, plastid | 40.73 | 46.07 |
CDY20069 | Canola | nucleus, plastid | 40.93 | 45.99 |
AT3G26990.1 | Thale cress | nucleus | 44.02 | 44.44 |
CDY52407 | Canola | plastid | 47.88 | 42.54 |
CDY00175 | Canola | mitochondrion | 41.51 | 40.64 |
GSMUA_Achr11P... | Banana | nucleus | 40.35 | 40.12 |
GSMUA_Achr10P... | Banana | nucleus | 40.35 | 39.96 |
HORVU3Hr1G095600.3 | Barley | extracellular | 10.81 | 38.1 |
Solyc11g012740.1.1 | Tomato | nucleus | 31.47 | 30.75 |
Solyc04g054410.2.1 | Tomato | nucleus | 30.12 | 30.41 |
TraesCS3D01G429500.1 | Wheat | nucleus | 24.9 | 28.1 |
TraesCS3A01G437300.1 | Wheat | nucleus | 25.29 | 27.81 |
Os01t0925000-02 | Rice | nucleus | 26.25 | 27.76 |
EES04124 | Sorghum | nucleus | 27.03 | 27.72 |
Zm00001d011975_P002 | Maize | nucleus | 26.64 | 27.06 |
TraesCS3B01G471400.1 | Wheat | endoplasmic reticulum | 25.29 | 26.1 |
HORVU3Hr1G095520.4 | Barley | cytosol, nucleus | 15.44 | 21.74 |
Zm00001d042291_P002 | Maize | mitochondrion, nucleus | 17.37 | 20.32 |
Protein Annotations
EnsemblPlants:Solyc02g094360.2.1 | EnsemblPlantsGene:Solyc02g094360.2 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 |
InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF9 | PFAM:PF04818 |
PFscan:PS51391 | SEG:seg | SMART:SM00582 | SUPFAM:SSF48464 | UniParc:UPI0002768AB0 | UniProt:K4BDN1 |
MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2:-:54904764..54914017
Molecular Weight (calculated)
56447.3 Da
IEP (calculated)
6.512
GRAVY (calculated)
-0.442
Length
518 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSTFNTQIL VDKLEMLNSS QQSIETLSHW CIFHMTKAKQ VVETWAQQFH CSPREQRLSF LYLANDILQN SRRKGAEFVA EFWKVLPDAL RDVIENGNEF
101: GRNAALRLIS IWDERKVFGS RGQILKEEFA GKHVGNGKHS GGKVRNSAGD ALDKIVSSYQ ILYGGQIDED AILSRAKNAI SCVAKIDKKI GSDLNPGHLN
201: GSGIVDELKG QHTILKDCVE QLTTVESSRV NLISHLREVL QEQEYKLDQV RNHLQAAQSH ADQVGSICGQ LLNFDGNGQI LAEQNIKEAN TSQAPHSFIS
301: GNREQSAPVM YTRQVSYEKS GNLEEDMKSA AAAVAAKLTA STSSAQMLSY VLSSLASEGV IGNSTKESLH DNQPEKRMKL ENDGSCYAPS QNPQEAVTFF
401: SQPNSVQHNL ASTGRESTPT EPPPLPSSPP PLAPLPPMQP YPAGQIIQTS GQLPSSTFVY ATSQQVQPAS TLGGFVPPVN GISPFTYPAT IGYQGYSSDS
501: SLYSHQSSSL PMAPVSRP
101: GRNAALRLIS IWDERKVFGS RGQILKEEFA GKHVGNGKHS GGKVRNSAGD ALDKIVSSYQ ILYGGQIDED AILSRAKNAI SCVAKIDKKI GSDLNPGHLN
201: GSGIVDELKG QHTILKDCVE QLTTVESSRV NLISHLREVL QEQEYKLDQV RNHLQAAQSH ADQVGSICGQ LLNFDGNGQI LAEQNIKEAN TSQAPHSFIS
301: GNREQSAPVM YTRQVSYEKS GNLEEDMKSA AAAVAAKLTA STSSAQMLSY VLSSLASEGV IGNSTKESLH DNQPEKRMKL ENDGSCYAPS QNPQEAVTFF
401: SQPNSVQHNL ASTGRESTPT EPPPLPSSPP PLAPLPPMQP YPAGQIIQTS GQLPSSTFVY ATSQQVQPAS TLGGFVPPVN GISPFTYPAT IGYQGYSSDS
501: SLYSHQSSSL PMAPVSRP
001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
Arabidopsis Description
At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.