Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G240200.1 | |
| TraesCS2B01G257800.1 | |
| TraesCS2D01G237900.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G26990.1 | TraesCS2A01G240200.1 | AT3G22960.1 | 21798944 |
| AT3G26990.1 | TraesCS2B01G257800.1 | AT3G22960.1 | 21798944 |
| AT3G26990.1 | TraesCS2D01G237900.1 | AT3G22960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G437300.1 | Wheat | nucleus | 88.65 | 94.48 |
| TraesCS3D01G429500.1 | Wheat | nucleus | 85.66 | 93.68 |
| HORVU3Hr1G095600.3 | Barley | extracellular | 24.7 | 84.35 |
| Os01t0925000-02 | Rice | nucleus | 52.99 | 54.29 |
| Zm00001d011975_P002 | Maize | nucleus | 46.81 | 46.08 |
| GSMUA_Achr4P15940_001 | Banana | cytosol | 18.33 | 45.54 |
| EES04124 | Sorghum | nucleus | 45.62 | 45.35 |
| GSMUA_Achr8P17800_001 | Banana | cytosol | 18.33 | 45.32 |
| Zm00001d042291_P002 | Maize | mitochondrion, nucleus | 33.47 | 37.92 |
| VIT_17s0000g00860.t01 | Wine grape | nucleus | 30.28 | 28.36 |
| VIT_14s0068g01560.t01 | Wine grape | cytosol | 29.48 | 28.24 |
| Bra039100.1-P | Field mustard | nucleus, plastid | 25.5 | 27.95 |
| CDY20069 | Canola | nucleus, plastid | 25.5 | 27.77 |
| KRG94593 | Soybean | nucleus | 28.69 | 27.59 |
| AT3G26990.1 | Thale cress | nucleus | 27.89 | 27.29 |
| KRH06897 | Soybean | nucleus | 27.89 | 26.67 |
| PGSC0003DMT400052044 | Potato | nucleus | 26.49 | 26.18 |
| CDY13671 | Canola | nucleus | 26.29 | 25.98 |
| Bra025240.1-P | Field mustard | nucleus | 25.9 | 25.74 |
| Solyc02g094360.2.1 | Tomato | nucleus | 26.1 | 25.29 |
| CDY00175 | Canola | mitochondrion | 26.29 | 24.95 |
| CDY52407 | Canola | plastid | 26.69 | 22.98 |
| TraesCS5B01G106400.1 | Wheat | nucleus | 22.91 | 22.46 |
| TraesCS5B01G139700.1 | Wheat | nucleus | 22.91 | 19.36 |
| TraesCS4B01G128200.1 | Wheat | nucleus | 22.11 | 19.07 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G471400.1 | EnsemblPlantsGene:TraesCS3B01G471400 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 |
| InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF9 | PFAM:PF04818 |
| PFscan:PS51391 | SEG:seg | SMART:SM00582 | SUPFAM:SSF48464 | TIGR:cd03562 | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:719922138..719931331
Molecular Weight (calculated)
55876.9 Da
IEP (calculated)
6.574
GRAVY (calculated)
-0.476
Length
502 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLCILQICV CICYVIWEFL IEQARLHKMS TGFSAEIFVQ KLAKLNIAQQ SIETLSHWCI FHHRCCQEVV DIWNRDFHSA PQERKISLLY LANDIMQNSK
101: KDGLRYIHEF LKVIAAALDD LFTNGDDFGR NVVKRLVDIW EDRKLFGTQG QLLKEEYIRK FKELKSKKPG GELVEKVISS YKHMLRAPVD EAKLMRECNS
201: ALSFVDNLNK EYGNSYLGSS NGYSFVEELK EQHSILRNTI ERFKMSESLR ATLVSDLKEA LHEQEFKTEL VRXXXXAAQV RYRKADDLCQ KLGIDVPRHE
301: PSNGVENSSL SEVPATFPPV SANANSVEKG RSTAVMYSRE GDGSEPETLN GGFSSRATRD NFEQKIEGHP PVTKRQKIEN GISVPQPEAP PPPPPLPYPD
401: TFEQPPPPPQ YPPSPESSPP PLPPSMPPPI PPPPPPSTDA FMPVPALPMG GMPYFPPFPP PVNYPMINMP PPFPGAPNPP HPGFLGFGGP FYGPPFPSAP
501: HQ
101: KDGLRYIHEF LKVIAAALDD LFTNGDDFGR NVVKRLVDIW EDRKLFGTQG QLLKEEYIRK FKELKSKKPG GELVEKVISS YKHMLRAPVD EAKLMRECNS
201: ALSFVDNLNK EYGNSYLGSS NGYSFVEELK EQHSILRNTI ERFKMSESLR ATLVSDLKEA LHEQEFKTEL VRXXXXAAQV RYRKADDLCQ KLGIDVPRHE
301: PSNGVENSSL SEVPATFPPV SANANSVEKG RSTAVMYSRE GDGSEPETLN GGFSSRATRD NFEQKIEGHP PVTKRQKIEN GISVPQPEAP PPPPPLPYPD
401: TFEQPPPPPQ YPPSPESSPP PLPPSMPPPI PPPPPPSTDA FMPVPALPMG GMPYFPPFPP PVNYPMINMP PPFPGAPNPP HPGFLGFGGP FYGPPFPSAP
501: HQ
001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
Arabidopsis Description
At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.