Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 5
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G26990.1 | CDX92969 | AT3G22960.1 | 21798944 |
| AT3G26990.1 | CDX94878 | AT3G22960.1 | 21798944 |
| AT3G26990.1 | CDY35484 | AT3G22960.1 | 21798944 |
| AT3G26990.1 | CDY40829 | AT3G22960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13671 | Canola | nucleus | 77.53 | 88.98 |
| CDY20069 | Canola | nucleus, plastid | 57.12 | 72.23 |
| AT3G26990.1 | Thale cress | nucleus | 61.75 | 70.18 |
| CDY00175 | Canola | mitochondrion | 58.66 | 64.65 |
| GSMUA_Achr8P17800_001 | Banana | cytosol | 19.38 | 55.66 |
| GSMUA_Achr4P15940_001 | Banana | cytosol | 18.18 | 52.48 |
| PGSC0003DMT400052044 | Potato | nucleus | 42.71 | 49.02 |
| KRG94593 | Soybean | nucleus | 43.05 | 48.08 |
| Solyc02g094360.2.1 | Tomato | nucleus | 42.54 | 47.88 |
| KRH06897 | Soybean | nucleus | 42.71 | 47.43 |
| VIT_17s0000g00860.t01 | Wine grape | nucleus | 40.65 | 44.22 |
| HORVU3Hr1G095600.3 | Barley | extracellular | 10.29 | 40.82 |
| GSMUA_Achr10P... | Banana | nucleus | 36.02 | 40.15 |
| GSMUA_Achr11P... | Banana | nucleus | 35.68 | 39.92 |
| CDX78365 | Canola | nucleus | 26.24 | 32.69 |
| CDX81155 | Canola | nucleus | 25.73 | 32.4 |
| CDY40076 | Canola | nucleus | 25.39 | 31.83 |
| Os01t0925000-02 | Rice | nucleus | 24.36 | 28.98 |
| TraesCS3A01G437300.1 | Wheat | nucleus | 22.64 | 28.03 |
| TraesCS3D01G429500.1 | Wheat | nucleus | 21.78 | 27.67 |
| TraesCS3B01G471400.1 | Wheat | endoplasmic reticulum | 22.98 | 26.69 |
| EES04124 | Sorghum | nucleus | 22.64 | 26.14 |
| Zm00001d011975_P002 | Maize | nucleus | 22.13 | 25.29 |
| HORVU3Hr1G095520.4 | Barley | cytosol, nucleus | 12.69 | 20.11 |
| Zm00001d042291_P002 | Maize | mitochondrion, nucleus | 14.75 | 19.41 |
Protein Annotations
| EnsemblPlants:CDY52407 | EnsemblPlantsGene:GSBRNA2T00006854001 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 |
| InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF9 | PFAM:PF04818 |
| PFscan:PS51391 | ProteinID:CDY52407 | ProteinID:CDY52407.1 | SEG:seg | SMART:SM00582 | SUPFAM:SSF48464 |
| UniParc:UPI0004EDBC96 | UniProt:A0A078IR19 | MapMan:35.2 | : | : | : |
Description
BnaC07g49060DBnaC07g49060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IR19]
Coordinates
chrLK033083:-:55132..58654
Molecular Weight (calculated)
63860.7 Da
IEP (calculated)
7.675
GRAVY (calculated)
-0.416
Length
583 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSHLPHQPT TTKIVVVCLF PSFLFNCSTS PAVSGSKSSD RTAPFYRLAH RNNTLLLLSV EFVKGGDWLL ELVEGTMGSS FNAQILVEKL SKLNNSQASI
101: ETLSHWCIFH MNKAKHVVET WGRQFHCSPR EQRLAYLYLA NDILQNSRRK GSEFVGEFWK VLPDALRDVI ENGDDFGRKA ARRLVNIWEE RKVFGSHGQI
201: LKEEILGKQP ENGARNGALV PLKLKQANGT TLERVVSSVE ALHGVQIGEN VIVGKCTSAA GYLERATQEV EKDLSSGHTP GPALVKEVQG QHAILRDCIE
301: QLGAVETSRI SLISHLREAL QEQELKLEQV RNHLQIARFQ SDRTGDLCKQ LLDHGSSSRP PATEESKEVI KVSPAASAPQ SFTHIEVEQS APVMFASNPP
401: TQSAVDPRKT AAAAVVARLT ASTSSAEMLS HVLSSLASEG IIGNNPPAVT GTPSSDEYPP EKRPKLQNHD QSYLQQLQQQ NAATTSTSPL LLPPPPPPPP
501: LYQLQPQYLQ PLQPPGPVNQ TPFNYTIATT SAPTQQQQGQ WVPGLTPLPT TSAPSDNSYQ KFQGQDGFYG INPSVSMAPV TRQ
101: ETLSHWCIFH MNKAKHVVET WGRQFHCSPR EQRLAYLYLA NDILQNSRRK GSEFVGEFWK VLPDALRDVI ENGDDFGRKA ARRLVNIWEE RKVFGSHGQI
201: LKEEILGKQP ENGARNGALV PLKLKQANGT TLERVVSSVE ALHGVQIGEN VIVGKCTSAA GYLERATQEV EKDLSSGHTP GPALVKEVQG QHAILRDCIE
301: QLGAVETSRI SLISHLREAL QEQELKLEQV RNHLQIARFQ SDRTGDLCKQ LLDHGSSSRP PATEESKEVI KVSPAASAPQ SFTHIEVEQS APVMFASNPP
401: TQSAVDPRKT AAAAVVARLT ASTSSAEMLS HVLSSLASEG IIGNNPPAVT GTPSSDEYPP EKRPKLQNHD QSYLQQLQQQ NAATTSTSPL LLPPPPPPPP
501: LYQLQPQYLQ PLQPPGPVNQ TPFNYTIATT SAPTQQQQGQ WVPGLTPLPT TSAPSDNSYQ KFQGQDGFYG INPSVSMAPV TRQ
001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
Arabidopsis Description
At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.