Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d018961_P002 | |
| Zm00001d034443_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G26990.1 | Zm00001d018961_P002 | AT3G22960.1 | 21798944 |
| AT3G26990.1 | Zm00001d034443_P001 | AT3G22960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d011975_P002 | Maize | nucleus | 64.79 | 56.27 |
| HORVU3Hr1G095520.4 | Barley | cytosol, nucleus | 36.57 | 44.02 |
| TraesCS3A01G437300.1 | Wheat | nucleus | 38.6 | 36.31 |
| Os01t0925000-02 | Rice | nucleus | 39.73 | 35.92 |
| TraesCS3D01G429500.1 | Wheat | nucleus | 36.79 | 35.51 |
| TraesCS3B01G471400.1 | Wheat | endoplasmic reticulum | 37.92 | 33.47 |
| GSMUA_Achr8P17800_001 | Banana | cytosol | 9.71 | 21.18 |
| Bra039100.1-P | Field mustard | nucleus, plastid | 20.77 | 20.09 |
| CDY20069 | Canola | nucleus, plastid | 20.32 | 19.52 |
| VIT_14s0068g01560.t01 | Wine grape | cytosol | 22.8 | 19.27 |
| GSMUA_Achr4P15940_001 | Banana | cytosol | 8.58 | 18.81 |
| KRG94593 | Soybean | nucleus | 21.22 | 18.01 |
| PGSC0003DMT400052044 | Potato | nucleus | 20.32 | 17.72 |
| KRH06897 | Soybean | nucleus | 20.99 | 17.71 |
| Solyc02g094360.2.1 | Tomato | nucleus | 20.32 | 17.37 |
| AT3G26990.1 | Thale cress | nucleus | 20.09 | 17.35 |
| CDY13671 | Canola | nucleus | 19.86 | 17.32 |
| CDY00175 | Canola | mitochondrion | 20.54 | 17.2 |
| VIT_17s0000g00860.t01 | Wine grape | nucleus | 20.77 | 17.16 |
| Bra025240.1-P | Field mustard | nucleus | 18.96 | 16.63 |
| Zm00001d005013_P001 | Maize | nucleus, plastid | 14.9 | 14.86 |
| CDY52407 | Canola | plastid | 19.41 | 14.75 |
| Zm00001d044657_P002 | Maize | nucleus | 19.41 | 14.68 |
| Zm00001d005012_P002 | Maize | nucleus, plastid | 14.0 | 14.66 |
| Zm00001d023272_P009 | Maize | nucleus | 19.86 | 14.55 |
| Zm00001d052407_P004 | Maize | nucleus | 18.96 | 13.57 |
| Zm00001d002140_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 16.25 | 12.52 |
| HORVU3Hr1G095600.3 | Barley | extracellular | 2.26 | 6.8 |
Protein Annotations
| EnsemblPlants:Zm00001d042291_P002 | EnsemblPlants:Zm00001d042291_T002 | EnsemblPlantsGene:Zm00001d042291 | ncoils:Coil | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF9 |
| PRINTS:PR01217 | ProteinID:ONM34971.1 | SEG:seg | UniParc:UPI000843D11A | UniProt:A0A1D6N2N0 | MapMan:35.2 |
Description
ENTH/VHS family protein
Coordinates
chr3:+:159321899..159326381
Molecular Weight (calculated)
48145.1 Da
IEP (calculated)
6.589
GRAVY (calculated)
-0.611
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MCTAVRAHRG CPRLSSPGIA GPLLVRIGAA PHDTSQFFFS MLQIDIWEDR KIFDTQAQSL KDDFFRRLKD IRNKLKNTGS ELLEKVVSSY KHVLNAPMDE
101: DTLMRKCQAA LINFDELNKT YGNNSVLGSS NQSEFMQGVQ EQHNILRNSI EQLKLSESLR ATLISHLKEA LNEQELKVEQ VRSLLQAAQP RFKRAAELCV
201: GLGSNMEMHE PSNQGHKRSS LSDPLSTVAP GAEKSLQKGQ SSAVLYSQEG NGFEHIMTET KLAAGDASDN IRGGDLPSQV NGGNTKLKIE EHTSGNKRQK
301: LEDDTDISQP QSQSPPPPPP FPHPDAFEPP PPPPPEVPPS PEPSPPPPPT SPPPNMIPPP PPAMPPQMIS HVPPPAGTFV PFPAGPPGPM YSSYPPFTPV
401: VNFPITSPPA GFPSPSPPPP FQGLVGTFYG PQFPTAPPPA DRK
101: DTLMRKCQAA LINFDELNKT YGNNSVLGSS NQSEFMQGVQ EQHNILRNSI EQLKLSESLR ATLISHLKEA LNEQELKVEQ VRSLLQAAQP RFKRAAELCV
201: GLGSNMEMHE PSNQGHKRSS LSDPLSTVAP GAEKSLQKGQ SSAVLYSQEG NGFEHIMTET KLAAGDASDN IRGGDLPSQV NGGNTKLKIE EHTSGNKRQK
301: LEDDTDISQP QSQSPPPPPP FPHPDAFEPP PPPPPEVPPS PEPSPPPPPT SPPPNMIPPP PPAMPPQMIS HVPPPAGTFV PFPAGPPGPM YSSYPPFTPV
401: VNFPITSPPA GFPSPSPPPP FQGLVGTFYG PQFPTAPPPA DRK
001: MSSPFSEEIL IDNLAKLNST QQSIQTLSQW CIVHRSEAEL VVTTWEKQFH STQIGQKVPL LYLANDILQN SKRQGNEFVQ EFWKVLPGAL KDIVSLGDDY
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS
Arabidopsis Description
ENTH/VHS family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJP7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.