Factsheet for Zm00001d002140_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002140_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10060.1	Zm00001d002140_P001	AT5G10060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12937	Sorghum	nucleus	76.87	83.87
TraesCS5B01G106400.1	Wheat	nucleus	65.91	74.02
TraesCS5D01G113800.2	Wheat	nucleus	65.74	73.83
TraesCS5A01G101800.1	Wheat	nucleus	65.74	73.83
Os04t0636700-01	Rice	nucleus	67.3	73.3
HORVU5Hr1G027930.1	Barley	nucleus	64.0	71.88
GSMUA_Achr8P24850_001	Banana	cytosol	50.96	53.66
GSMUA_Achr4P09200_001	Banana	nucleus	50.96	51.77
KRG97617	Soybean	mitochondrion	28.17	49.39
VIT_07s0031g01240.t01	Wine grape	nucleus	44.7	49.05
Bra006045.1-P	Field mustard	nucleus	36.7	45.38
AT5G65180.1	Thale cress	nucleus	34.61	45.33
KRH43251	Soybean	nucleus	40.0	45.19
Solyc04g054410.2.1	Tomato	nucleus	39.48	44.25
CDX78365	Canola	nucleus	36.0	44.23
CDX81155	Canola	nucleus	35.48	44.06
KRH59408	Soybean	nucleus	36.52	43.48
CDY40076	Canola	nucleus	35.13	43.44
AT5G10060.1	Thale cress	nucleus	34.96	42.86
PGSC0003DMT400033300	Potato	nucleus	33.57	42.23
KRH31254	Soybean	nucleus	39.3	40.94
Zm00001d044657_P002	Maize	nucleus	30.96	30.38
Zm00001d052407_P004	Maize	nucleus	31.3	29.08
Zm00001d023272_P009	Maize	nucleus	29.91	28.43
Zm00001d011975_P002	Maize	nucleus	22.43	25.29
Zm00001d005013_P001	Maize	nucleus, plastid	19.48	25.23
Zm00001d005012_P002	Maize	nucleus, plastid	18.43	25.06
Zm00001d042291_P002	Maize	mitochondrion, nucleus	12.52	16.25

Protein Annotations

EnsemblPlants:Zm00001d002140_P001	EnsemblPlants:Zm00001d002140_T001	EnsemblPlantsGene:Zm00001d002140	Gene3D:1.25.40.90	InterPro:CID_dom	InterPro:ENTH_VHS
InterPro:IPR006569	InterPro:IPR008942	InterPro:RNA_pol_II-bd	ncoils:Coil	PANTHER:PTHR12460	PANTHER:PTHR12460:SF4
PFAM:PF04818	PFscan:PS51391	ProteinID:ONM13194.1	SEG:seg	SMART:SM00582	SUPFAM:SSF48464
UniParc:UPI0008441573	UniProt:A0A1D6DWZ8	MapMan:35.2	:	:	:

Description

ENTH/VHS family protein

Coordinates

chr2:-:6555540..6559295

Molecular Weight (calculated)

64049.3 Da

IEP (calculated)

9.090

GRAVY (calculated)

-0.469

Length

575 amino acids

Sequence
(BLAST)

001: MNSAFSEDIL AGKLAKLNNT QQCIESILSL LFSVHNFGFW SVCGAFKEFW KNLQPARVVS RFLCCLDFCS LWPLALSHWC IYHRKNAEQI VQTWDKQFHS
101: FGKEQKIPFL YLANDILQNS KRNGTEFVEE FWKVLPGALK DVSENGDDRG KKVASRLVDI WQERRVFGSR AGGIKDVMLG AAPLPVLDMT KKRSRSSAIR
201: IVKRDSRSVK LRLGIGGTAE RIISALHTVL SEQADEDDDL EKCKTSMRHV GKMEKDVDSA CSKAEDPRRE VLCTELKDEE ANMKKCIEKL KAVEKNRAAI
301: VFELKEALQE QESELEKVRT QLQLAEAMVH EASNMQRRLK NEPTIPLPRS ASLVEPGKVV SNGQVKEQHK TAAAILADKI AASSNSQQIL QSALSKFAAE
401: EAKNSSETRS DKRQKAEQLS QVPSVANAAA FVPMPQVVAT TAQQQPQAIL VQQAPMQSQA TASQPQYNIY QAPPQQFVPQ PGGVMMGMPY NMSSMTPPPP
501: PPPQMMSLGR PSPSAPQPQM AVMPQTQPPA PPMLQQQMPM NLGPQMQFTL QPPGVPPFRP MQPPPGMQYF HPQSQ

Best Arabidopsis Sequence Match ( AT5G65180.1 )
(BLAST)

001: MSSPFSEEIL IDNLAKLNST QQSIQTLSQW CIVHRSEAEL VVTTWEKQFH STQIGQKVPL LYLANDILQN SKRQGNEFVQ EFWKVLPGAL KDIVSLGDDY
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS

Arabidopsis Description

ENTH/VHS family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.