Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10060.1 | KRG97617 | AT5G10060.1 | 21798944 |
| AT5G10060.1 | KRH31254 | AT5G10060.1 | 21798944 |
| AT5G10060.1 | KRH43251 | AT5G10060.1 | 21798944 |
| AT5G10060.1 | KRH59408 | AT5G10060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH43251 | Soybean | nucleus | 91.51 | 86.84 |
| KRG97617 | Soybean | mitochondrion | 41.61 | 61.28 |
| VIT_07s0031g01240.t01 | Wine grape | nucleus | 63.77 | 58.78 |
| PGSC0003DMT400033300 | Potato | nucleus | 50.93 | 53.83 |
| Solyc04g054410.2.1 | Tomato | nucleus | 55.07 | 51.85 |
| KRH31254 | Soybean | nucleus | 55.69 | 48.73 |
| AT5G65180.1 | Thale cress | nucleus | 44.1 | 48.52 |
| CDY40076 | Canola | nucleus | 44.93 | 46.67 |
| Bra006045.1-P | Field mustard | nucleus | 44.72 | 46.45 |
| AT5G10060.1 | Thale cress | nucleus | 44.51 | 45.84 |
| CDX78365 | Canola | nucleus | 44.31 | 45.73 |
| CDX81155 | Canola | nucleus | 43.48 | 45.36 |
| GSMUA_Achr4P09200_001 | Banana | nucleus | 50.72 | 43.29 |
| TraesCS5D01G113800.2 | Wheat | nucleus | 45.13 | 42.58 |
| TraesCS5A01G101800.1 | Wheat | nucleus | 44.93 | 42.38 |
| TraesCS5B01G106400.1 | Wheat | nucleus | 44.72 | 42.19 |
| GSMUA_Achr8P24850_001 | Banana | cytosol | 47.62 | 42.12 |
| Os04t0636700-01 | Rice | nucleus | 45.13 | 41.29 |
| EES12937 | Sorghum | nucleus | 44.93 | 41.18 |
| HORVU5Hr1G027930.1 | Barley | nucleus | 43.27 | 40.82 |
| Zm00001d002140_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 43.48 | 36.52 |
| KRG94958 | Soybean | nucleus | 38.51 | 35.29 |
| KRH64929 | Soybean | nucleus | 38.1 | 35.18 |
| KRH57843 | Soybean | mitochondrion | 36.65 | 33.59 |
| KRG94593 | Soybean | nucleus | 33.75 | 31.23 |
| KRH06897 | Soybean | nucleus | 33.13 | 30.48 |
Protein Annotations
| Gene3D:1.25.40.90 | MapMan:35.2 | UniProt:A0A0R0JXH5 | EMBL:ACUP02003322 | InterPro:CID_dom | ncoils:Coil |
| InterPro:ENTH_VHS | EnsemblPlantsGene:GLYMA_05G181900 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR006569 |
| InterPro:IPR008942 | EnsemblPlants:KRH59408 | ProteinID:KRH59408 | ProteinID:KRH59408.1 | PFAM:PF04818 | PFscan:PS51391 |
| PANTHER:PTHR12460 | PANTHER:PTHR12460:SF4 | InterPro:RNA_pol_II-bd | SMART:SM00582 | SUPFAM:SSF48464 | UniParc:UPI0006ED7EB8 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:+:36987329..36990158
Molecular Weight (calculated)
53709.2 Da
IEP (calculated)
9.068
GRAVY (calculated)
-0.476
Length
483 amino acids
Sequence
(BLAST)
(BLAST)
001: LSHWCIFHRS KAELVVGTWN KQFHNSEKVQ RVPLLYLAND ILQNSKRKGN EFVTEFWKVL PTALKDVLEK GDDQEKRAVF RLVDIWEERR VFGSQAKSLK
101: NVILGEEAPP QLEFNKKRSR SVRIVKKDSR SIKTKLSIGG TAEKIVSAFH TVLNEHSNED AEMSKCKAAV HRVRKMEKNV DIACTVVKDP KRKTLSKELV
201: EEENILKECI ENLKLVEASR TSLVTRLKEA LHEQESELEN VRTQIQVAQA QVEEASYMRK RLDDEDSSYK ASTSTTSVTD VNTKSEAATK KSAAAIAAEV
301: ADKLTASTSS QLIMTSVLST FAAEEAKSAC LTSETMSKPE KSIPISDPNV FMTSQQLIAT PNHSYPSVLV PQPTLQNPAA ASQGQYQMLC NSSSQHYLQS
401: TGGVISSYGY GSIAPLPLGP PPPHMVGPMV PLTHQTMQIT QQLPTPIGQH QPIKMTQQAP APPNFRPLQL PGMVYYGNHQ HSI
101: NVILGEEAPP QLEFNKKRSR SVRIVKKDSR SIKTKLSIGG TAEKIVSAFH TVLNEHSNED AEMSKCKAAV HRVRKMEKNV DIACTVVKDP KRKTLSKELV
201: EEENILKECI ENLKLVEASR TSLVTRLKEA LHEQESELEN VRTQIQVAQA QVEEASYMRK RLDDEDSSYK ASTSTTSVTD VNTKSEAATK KSAAAIAAEV
301: ADKLTASTSS QLIMTSVLST FAAEEAKSAC LTSETMSKPE KSIPISDPNV FMTSQQLIAT PNHSYPSVLV PQPTLQNPAA ASQGQYQMLC NSSSQHYLQS
401: TGGVISSYGY GSIAPLPLGP PPPHMVGPMV PLTHQTMQIT QQLPTPIGQH QPIKMTQQAP APPNFRPLQL PGMVYYGNHQ HSI
001: MSSVFSDQIL IDKLAKLNSS QQSIETLSHW CIFNRSKAEL IVTTWEKQFH STEMDQKVPL LYLANDILQN SKRQGNEFVQ EFWNVLPKAL KDIVSQGDDN
101: GKSAVARVIK IWEERRVFGS RSKSLKDVML GEDVPLPLDI SKKRPRGSKS SKRESKSSRT KLASSGGVAE KIASAYHLVV AENSNEEAEM NKCKSAVKRI
201: RKMEKDVEEA CSTAKDNPKR KSLAKELEEE EYLLRQCIEK LKSVQGSRSS LVNQLKDALR EQESELDNLK AQIQVAKEQT EEAQNMQKRL NDEDYTSKQT
301: TAATTITETN DNTKSGQASK MTPASIAAML TASTSSHMIM QSVLSSFAAE ATKTSGLSKS ESTVPVSDTN ASFPSYNNSQ NQTPTTQGQY HVIPNPPPPQ
401: FLKPPVMNNP YAFGNIPLMP PGLPPPPPPP HLIGNQQPQI PQSNSAQQSQ QGPTFQPPGI MYYGAPHHS
101: GKSAVARVIK IWEERRVFGS RSKSLKDVML GEDVPLPLDI SKKRPRGSKS SKRESKSSRT KLASSGGVAE KIASAYHLVV AENSNEEAEM NKCKSAVKRI
201: RKMEKDVEEA CSTAKDNPKR KSLAKELEEE EYLLRQCIEK LKSVQGSRSS LVNQLKDALR EQESELDNLK AQIQVAKEQT EEAQNMQKRL NDEDYTSKQT
301: TAATTITETN DNTKSGQASK MTPASIAAML TASTSSHMIM QSVLSSFAAE ATKTSGLSKS ESTVPVSDTN ASFPSYNNSQ NQTPTTQGQY HVIPNPPPPQ
401: FLKPPVMNNP YAFGNIPLMP PGLPPPPPPP HLIGNQQPQI PQSNSAQQSQ QGPTFQPPGI MYYGAPHHS
Arabidopsis Description
At5g10060 [Source:UniProtKB/TrEMBL;Acc:Q8GUK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.