Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G101800.1 | |
| TraesCS5B01G106400.1 | |
| TraesCS5D01G113800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10060.1 | TraesCS5A01G101800.1 | AT5G10060.1 | 21798944 |
| AT5G10060.1 | TraesCS5B01G106400.1 | AT5G10060.1 | 21798944 |
| AT5G10060.1 | TraesCS5D01G113800.2 | AT5G10060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G113800.2 | Wheat | nucleus | 99.22 | 99.22 |
| HORVU5Hr1G027930.1 | Barley | nucleus | 96.29 | 96.29 |
| TraesCS5B01G106400.1 | Wheat | nucleus | 94.92 | 94.92 |
| Os04t0636700-01 | Rice | nucleus | 81.45 | 78.98 |
| EES12937 | Sorghum | nucleus | 79.49 | 77.23 |
| Zm00001d002140_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 73.83 | 65.74 |
| GSMUA_Achr4P09200_001 | Banana | nucleus | 56.84 | 51.41 |
| KRG97617 | Soybean | mitochondrion | 32.42 | 50.61 |
| GSMUA_Achr8P24850_001 | Banana | cytosol | 53.32 | 50.0 |
| VIT_07s0031g01240.t01 | Wine grape | nucleus | 48.24 | 47.14 |
| KRH43251 | Soybean | nucleus | 46.09 | 46.37 |
| AT5G65180.1 | Thale cress | nucleus | 39.26 | 45.79 |
| Solyc04g054410.2.1 | Tomato | nucleus | 45.51 | 45.42 |
| KRH59408 | Soybean | nucleus | 42.38 | 44.93 |
| Bra006045.1-P | Field mustard | nucleus | 39.06 | 43.01 |
| CDY40076 | Canola | nucleus | 38.87 | 42.8 |
| CDX81155 | Canola | nucleus | 38.67 | 42.76 |
| PGSC0003DMT400033300 | Potato | nucleus | 38.09 | 42.67 |
| CDX78365 | Canola | nucleus | 38.67 | 42.31 |
| AT5G10060.1 | Thale cress | nucleus | 38.09 | 41.58 |
| KRH31254 | Soybean | nucleus | 43.55 | 40.4 |
| TraesCS4A01G188700.1 | Wheat | nucleus | 37.89 | 33.39 |
| TraesCS5A01G141400.1 | Wheat | nucleus | 35.55 | 30.64 |
| TraesCS3A01G437300.1 | Wheat | nucleus | 22.07 | 23.99 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G101800.1 | EnsemblPlantsGene:TraesCS5A01G101800 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 |
| InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF4 | PFAM:PF04818 |
| PFscan:PS51391 | SEG:seg | SMART:SM00582 | SUPFAM:SSF48464 | TIGR:cd03562 | MapMan:35.2 |
Description
No Description!
Coordinates
chr5A:+:151245000..151247508
Molecular Weight (calculated)
56853.1 Da
IEP (calculated)
8.569
GRAVY (calculated)
-0.597
Length
512 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAFSEEIL ADKLAKLNNT QQCIETLSHW CIYHRKDAEL IVQTWAKQFH NSGNEQKVPF LYLANDILQN SKRNGTEFVE EFWKVLPTTL KDVAEKGDDR
101: GKKTVSRLVD IWQERRVFGS RAGGIKDVML GTAPLPVLDM TKKRSHSSSI KIVKRDSRSV KLRLGVGGTA ERIVSALHTV LSEQADEDAD LENCKTSMRH
201: VGKMEKDVDS ACNKAEDPRR ETLCTKLKDE EATMKKCIEK LKAVEENRAA VVSELKEALQ EQESELEKVR TQLQLAEAMV EETANMQRRL NNEPIIPSSK
301: LASSVEPGNS LSNGQVKGQQ KTAAAILADK IASSSNSQQI LQSALSKFAA ENSSEIRSDK RMKVEQSSQV PSVANAAAFV PMPSMVTTAA QQPQTILVQQ
401: TPVQGQASAP QPQYNIYQAP PQHFVQQPGG LIMGMPYSMN TMNPPPPPPP PQMMNLARAQ TQPQPPTQQM LQQQMQMNVA PPMQFTLQQP GAPPFRPLQP
501: PPGMQFFHHQ SQ
101: GKKTVSRLVD IWQERRVFGS RAGGIKDVML GTAPLPVLDM TKKRSHSSSI KIVKRDSRSV KLRLGVGGTA ERIVSALHTV LSEQADEDAD LENCKTSMRH
201: VGKMEKDVDS ACNKAEDPRR ETLCTKLKDE EATMKKCIEK LKAVEENRAA VVSELKEALQ EQESELEKVR TQLQLAEAMV EETANMQRRL NNEPIIPSSK
301: LASSVEPGNS LSNGQVKGQQ KTAAAILADK IASSSNSQQI LQSALSKFAA ENSSEIRSDK RMKVEQSSQV PSVANAAAFV PMPSMVTTAA QQPQTILVQQ
401: TPVQGQASAP QPQYNIYQAP PQHFVQQPGG LIMGMPYSMN TMNPPPPPPP PQMMNLARAQ TQPQPPTQQM LQQQMQMNVA PPMQFTLQQP GAPPFRPLQP
501: PPGMQFFHHQ SQ
001: MSSPFSEEIL IDNLAKLNST QQSIQTLSQW CIVHRSEAEL VVTTWEKQFH STQIGQKVPL LYLANDILQN SKRQGNEFVQ EFWKVLPGAL KDIVSLGDDY
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS
Arabidopsis Description
ENTH/VHS family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJP7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.