Factsheet for GSMUA_Achr8P24850_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P09200_001
GSMUA_Achr8P24850_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10060.1	GSMUA_Achr4P09200_001	AT5G10060.1	21798944
AT5G10060.1	GSMUA_Achr8P24850_001	AT5G10060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P09200_001	Banana	nucleus	71.98	69.43
EES12937	Sorghum	nucleus	52.75	54.65
Os04t0636700-01	Rice	nucleus	52.2	53.98
TraesCS5B01G106400.1	Wheat	nucleus	50.55	53.91
VIT_07s0031g01240.t01	Wine grape	nucleus	51.65	53.82
KRG97617	Soybean	mitochondrion	32.23	53.66
TraesCS5D01G113800.2	Wheat	nucleus	50.18	53.52
TraesCS5A01G101800.1	Wheat	nucleus	50.0	53.32
HORVU5Hr1G027930.1	Barley	nucleus	49.45	52.73
Zm00001d002140_P001	Maize	cytosol, endoplasmic reticulum, nucleus	53.66	50.96
Solyc04g054410.2.1	Tomato	nucleus	47.44	50.49
KRH43251	Soybean	nucleus	46.7	50.1
AT5G65180.1	Thale cress	nucleus	38.64	48.06
GSMUA_Achr8P17800_001	Banana	cytosol	17.77	47.78
KRH59408	Soybean	nucleus	42.12	47.62
GSMUA_Achr4P15940_001	Banana	cytosol	17.58	47.52
Bra006045.1-P	Field mustard	nucleus	40.29	47.31
CDY40076	Canola	nucleus	40.11	47.1
PGSC0003DMT400033300	Potato	nucleus	39.19	46.83
CDX81155	Canola	nucleus	39.38	46.44
CDX78365	Canola	nucleus	39.01	45.51
AT5G10060.1	Thale cress	nucleus	38.46	44.78
KRH31254	Soybean	nucleus	45.05	44.57
GSMUA_Achr11P...	Banana	cytosol	36.63	37.74
GSMUA_Achr4P02300_001	Banana	nucleus	37.91	37.16
GSMUA_Achr11P...	Banana	nucleus	32.78	34.36
GSMUA_Achr10P...	Banana	nucleus	30.22	31.55

Protein Annotations

EnsemblPlants:GSMUA_Achr8P24850_001	EnsemblPlants:GSMUA_Achr8T24850_001	EnsemblPlantsGene:GSMUA_Achr8G24850_001	Gene3D:1.25.40.90	InterPro:CID_dom	InterPro:ENTH_VHS
InterPro:IPR006569	InterPro:IPR008942	InterPro:RNA_pol_II-bd	ncoils:Coil	PANTHER:PTHR12460	PANTHER:PTHR12460:SF4
PFAM:PF04818	PFscan:PS51391	SEG:seg	SMART:SM00582	SUPFAM:SSF48464	UniParc:UPI000295B45D
UniProt:M0TTD8	MapMan:35.2	:	:	:	:

Description

protein of unknown function, DUF618 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G24850_001]

Coordinates

chr8:-:28867169..28872115

Molecular Weight (calculated)

60491.5 Da

IEP (calculated)

8.678

GRAVY (calculated)

-0.441

Length

546 amino acids

Sequence
(BLAST)

001: MNSVFSEQIL ADKLSKLNST QQCIETLSHW CIFHRKHAEQ VIQTWDKQFH SSQREQKVPF LYLANDILQN SKRTGTEFVS EFWKVLPAAL KDVFENGDEH
101: GKNVVSRLVD IWDQRRVFGS RARGLKELML GSEPLPTLEL NKKRSRGSVR IIRRDSRSVK IKLSMGGTAE KIISALHNVL SEHAKEESDL NKCKAAVMHA
201: AQLEKDVESV CKHDGDPRRG SLANELQDEE ATLKECVEKL KLIESNRAVL VFHLKEALQE QESNLENVRT QLQLAEAMVE EAVNMRKRLN NEPIVMPNKP
301: LSAPESPKPD SIGPPAKISE KTAAAIAAEV ADKLTASTHS QQIMTSVLST FAAEEAKNAG LATSTNPSNS LPIATSDRRM ISEKPLPISD TTTTTAFVPV
401: QQIVVSTPHQ PQAVLVRQSP VQSQASATQT QYNMYPVSTQ QYLQPSGGVM IGLPYTFSTL PPPPPPIPQV INLARSSSPL VQQQQPMALI QQPAAAAAPP
501: PPPLLNMNQP MLINQQPPQY ALQQPAPRSY RPLQTPGITF YHAQIQ

Best Arabidopsis Sequence Match ( AT5G65180.1 )
(BLAST)

001: MSSPFSEEIL IDNLAKLNST QQSIQTLSQW CIVHRSEAEL VVTTWEKQFH STQIGQKVPL LYLANDILQN SKRQGNEFVQ EFWKVLPGAL KDIVSLGDDY
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS

Arabidopsis Description

ENTH/VHS family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.