Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G10060.1 | Thale cress | nucleus | 66.29 | 62.05 |
| KRG97617 | Soybean | mitochondrion | 38.27 | 51.22 |
| VIT_07s0031g01240.t01 | Wine grape | nucleus | 56.95 | 47.71 |
| Solyc04g054410.2.1 | Tomato | nucleus | 53.76 | 46.0 |
| KRH43251 | Soybean | nucleus | 53.08 | 45.78 |
| KRH59408 | Soybean | nucleus | 48.52 | 44.1 |
| PGSC0003DMT400033300 | Potato | nucleus | 45.1 | 43.33 |
| KRH31254 | Soybean | nucleus | 51.94 | 41.3 |
| HORVU5Hr1G027930.1 | Barley | nucleus | 46.24 | 39.65 |
| TraesCS5A01G101800.1 | Wheat | nucleus | 45.79 | 39.26 |
| TraesCS5D01G113800.2 | Wheat | nucleus | 45.79 | 39.26 |
| TraesCS5B01G106400.1 | Wheat | nucleus | 45.33 | 38.87 |
| EES12937 | Sorghum | nucleus | 46.47 | 38.71 |
| GSMUA_Achr8P24850_001 | Banana | cytosol | 48.06 | 38.64 |
| Os04t0636700-01 | Rice | nucleus | 46.24 | 38.45 |
| GSMUA_Achr4P09200_001 | Banana | nucleus | 49.2 | 38.16 |
| Zm00001d002140_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 45.33 | 34.61 |
| AT3G26990.1 | Thale cress | nucleus | 32.12 | 27.49 |
Protein Annotations
| Gene3D:1.25.40.90 | MapMan:35.2 | EntrezGene:836642 | UniProt:A0A178UAS8 | ProteinID:AED98014.1 | ArrayExpress:AT5G65180 |
| EnsemblPlantsGene:AT5G65180 | RefSeq:AT5G65180 | TAIR:AT5G65180 | RefSeq:AT5G65180-TAIR-G | EnsemblPlants:AT5G65180.1 | TAIR:AT5G65180.1 |
| EMBL:AY034943 | EMBL:AY063122 | Unigene:At.9292 | ProteinID:BAB11654.1 | InterPro:CID_dom | ncoils:Coil |
| InterPro:ENTH_VHS | GO:GO:0003674 | InterPro:IPR006569 | InterPro:IPR008942 | RefSeq:NP_569007.1 | ProteinID:OAO90770.1 |
| PFAM:PF04818 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS51391 |
| PANTHER:PTHR12460 | PANTHER:PTHR12460:SF4 | UniProt:Q9FJP7 | InterPro:RNA_pol_II-bd | SMART:SM00582 | SUPFAM:SSF48464 |
| UniParc:UPI00000A0C7C | SEG:seg | : | : | : | : |
Description
ENTH/VHS family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJP7]
Coordinates
chr5:+:26045327..26048031
Molecular Weight (calculated)
48711.5 Da
IEP (calculated)
7.023
GRAVY (calculated)
-0.685
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPFSEEIL IDNLAKLNST QQSIQTLSQW CIVHRSEAEL VVTTWEKQFH STQIGQKVPL LYLANDILQN SKRQGNEFVQ EFWKVLPGAL KDIVSLGDDY
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.