Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- cytosol 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20069 | Canola | nucleus, plastid | 66.08 | 73.54 |
| CDY13671 | Canola | nucleus | 72.71 | 73.43 |
| Bra039100.1-P | Field mustard | nucleus, plastid | 65.3 | 73.14 |
| Bra025240.1-P | Field mustard | nucleus | 70.96 | 72.08 |
| CDY00175 | Canola | mitochondrion | 65.89 | 63.89 |
| CDY52407 | Canola | plastid | 70.18 | 61.75 |
| GSMUA_Achr8P17800_001 | Banana | cytosol | 22.81 | 57.64 |
| GSMUA_Achr4P15940_001 | Banana | cytosol | 20.66 | 52.48 |
| KRG94593 | Soybean | nucleus | 48.34 | 47.51 |
| KRH06897 | Soybean | nucleus | 47.76 | 46.67 |
| PGSC0003DMT400052044 | Potato | nucleus | 44.64 | 45.08 |
| Solyc02g094360.2.1 | Tomato | nucleus | 44.44 | 44.02 |
| VIT_17s0000g00860.t01 | Wine grape | nucleus | 45.61 | 43.66 |
| GSMUA_Achr11P... | Banana | nucleus | 42.3 | 41.65 |
| GSMUA_Achr10P... | Banana | nucleus | 41.52 | 40.73 |
| HORVU3Hr1G095600.3 | Barley | extracellular | 11.5 | 40.14 |
| AT5G65180.1 | Thale cress | nucleus | 27.49 | 32.12 |
| AT5G10060.1 | Thale cress | nucleus | 28.85 | 31.56 |
| Os01t0925000-02 | Rice | nucleus | 28.85 | 30.2 |
| TraesCS3A01G437300.1 | Wheat | nucleus | 26.51 | 28.87 |
| TraesCS3D01G429500.1 | Wheat | nucleus | 25.73 | 28.76 |
| TraesCS3B01G471400.1 | Wheat | endoplasmic reticulum | 27.29 | 27.89 |
| EES04124 | Sorghum | nucleus | 26.71 | 27.13 |
| Zm00001d011975_P002 | Maize | nucleus | 26.12 | 26.27 |
| HORVU3Hr1G095520.4 | Barley | cytosol, nucleus | 15.59 | 21.74 |
| Zm00001d042291_P002 | Maize | mitochondrion, nucleus | 17.35 | 20.09 |
Protein Annotations
| Gene3D:1.25.40.90 | MapMan:35.2 | EntrezGene:822316 | ProteinID:AEE77252.1 | ProteinID:ANM63887.1 | ArrayExpress:AT3G26990 |
| EnsemblPlantsGene:AT3G26990 | RefSeq:AT3G26990 | TAIR:AT3G26990 | RefSeq:AT3G26990-TAIR-G | EnsemblPlants:AT3G26990.1 | TAIR:AT3G26990.1 |
| Unigene:At.43702 | EMBL:BT015401 | InterPro:CID_dom | ncoils:Coil | InterPro:ENTH_VHS | InterPro:IPR006569 |
| InterPro:IPR008942 | RefSeq:NP_001325949.1 | RefSeq:NP_189335.2 | PFAM:PF04818 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS51391 | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF9 | UniProt:Q66GK1 | InterPro:RNA_pol_II-bd | SMART:SM00582 |
| SUPFAM:SSF48464 | UniParc:UPI0000196E57 | SEG:seg | : | : | : |
Description
At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
Coordinates
chr3:-:9948125..9952041
Molecular Weight (calculated)
56465.3 Da
IEP (calculated)
6.461
GRAVY (calculated)
-0.559
Length
513 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.