Factsheet for GSMUA_Achr4P15940_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P17520_001
GSMUA_Achr4P21110_001
GSMUA_Achr4P28510_001
GSMUA_Achr7P16760_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26990.1	GSMUA_Achr2P17520_001	AT3G22960.1	21798944
AT3G26990.1	GSMUA_Achr4P21110_001	AT3G22960.1	21798944
AT3G26990.1	GSMUA_Achr4P28510_001	AT3G22960.1	21798944
AT3G26990.1	GSMUA_Achr7P16760_001	AT3G22960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P17800_001	Banana	cytosol	75.25	74.88
HORVU3Hr1G095600.3	Barley	extracellular	29.7	40.82
GSMUA_Achr11P...	Banana	nucleus	61.39	23.8
GSMUA_Achr10P...	Banana	nucleus	59.41	22.94
VIT_14s0068g01560.t01	Wine grape	cytosol	55.45	21.37
PGSC0003DMT400052044	Potato	nucleus	53.47	21.26
Bra039100.1-P	Field mustard	nucleus, plastid	48.02	21.18
CDY13671	Canola	nucleus	52.97	21.06
Bra025240.1-P	Field mustard	nucleus	52.48	20.99
KRG94593	Soybean	nucleus	53.96	20.88
CDY20069	Canola	nucleus, plastid	47.52	20.82
AT3G26990.1	Thale cress	nucleus	52.48	20.66
Solyc02g094360.2.1	Tomato	nucleus	52.97	20.66
KRH06897	Soybean	nucleus	53.47	20.57
VIT_17s0000g00860.t01	Wine grape	nucleus	53.96	20.34
Os01t0925000-02	Rice	nucleus	49.01	20.2
TraesCS3D01G429500.1	Wheat	nucleus	45.05	19.83
TraesCS3A01G437300.1	Wheat	nucleus	45.54	19.53
GSMUA_Achr11P...	Banana	cytosol	50.0	19.06
CDY00175	Canola	mitochondrion	48.51	18.53
TraesCS3B01G471400.1	Wheat	endoplasmic reticulum	45.54	18.33
CDY52407	Canola	plastid	52.48	18.18
Zm00001d011975_P002	Maize	nucleus	44.55	17.65
GSMUA_Achr8P24850_001	Banana	cytosol	47.52	17.58
EES04124	Sorghum	nucleus	43.56	17.43
GSMUA_Achr4P02300_001	Banana	nucleus	47.52	17.24
GSMUA_Achr4P09200_001	Banana	nucleus	47.03	16.78
HORVU3Hr1G095520.4	Barley	cytosol, nucleus	16.34	8.97
Zm00001d042291_P002	Maize	mitochondrion, nucleus	18.81	8.58

Protein Annotations

EnsemblPlants:GSMUA_Achr4P15940_001	EnsemblPlants:GSMUA_Achr4T15940_001	EnsemblPlantsGene:GSMUA_Achr4G15940_001	Gene3D:1.25.40.90	InterPro:CID_dom	InterPro:ENTH_VHS
InterPro:IPR006569	InterPro:IPR008942	InterPro:RNA_pol_II-bd	PANTHER:PTHR12460	PANTHER:PTHR12460:SF9	PFAM:PF04818
PFscan:PS51391	SMART:SM00582	SUPFAM:SSF48464	UniParc:UPI00029540D0	UniProt:M0SPA8	MapMan:35.2

Description

protein of unknown function, DUF618 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G15940_001]

Coordinates

chr4:+:13925856..13930810

Molecular Weight (calculated)

23102.2 Da

IEP (calculated)

5.329

GRAVY (calculated)

-0.525

Length

202 amino acids

Sequence
(BLAST)

001: MNGSFNGQVL ADKLTKLNNG QQSIETLSHW CIFHRKKAKQ VVETWQQQFY CAPRDQRISF LYLANDILQN SRWKGLEFID EFWKVIPGAL SDVFNNGGEI
101: GRSTVVRLMD IWEERKVFGS HGQVLKDNIL GSDNGNKNIN EKVIRYKLKH PSGEQLEELI SGYTHIYDLP YDEDTLYGNC QAATNLVDEV DKELVSELGG
201: NC

Best Arabidopsis Sequence Match ( AT3G26990.1 )
(BLAST)

001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ

Arabidopsis Description

At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.