Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH06897 | Soybean | nucleus | 59.54 | 59.43 |
| GSMUA_Achr8P17800_001 | Banana | cytosol | 22.9 | 59.11 |
| KRG94593 | Soybean | nucleus | 58.78 | 59.0 |
| PGSC0003DMT400052044 | Potato | nucleus | 57.06 | 58.86 |
| Solyc02g094360.2.1 | Tomato | nucleus | 57.44 | 58.11 |
| GSMUA_Achr4P15940_001 | Banana | cytosol | 21.37 | 55.45 |
| VIT_17s0000g00860.t01 | Wine grape | nucleus | 50.76 | 49.63 |
| GSMUA_Achr11P... | Banana | nucleus | 44.47 | 44.72 |
| GSMUA_Achr10P... | Banana | nucleus | 43.32 | 43.4 |
| HORVU3Hr1G095600.3 | Barley | extracellular | 11.45 | 40.82 |
| VIT_07s0031g01240.t01 | Wine grape | nucleus | 34.73 | 34.73 |
| TraesCS3A01G437300.1 | Wheat | nucleus | 28.44 | 31.63 |
| VIT_08s0056g00770.t01 | Wine grape | cytosol | 39.89 | 31.29 |
| Os01t0925000-02 | Rice | nucleus | 29.2 | 31.22 |
| TraesCS3D01G429500.1 | Wheat | nucleus | 26.91 | 30.72 |
| EES04124 | Sorghum | nucleus | 28.82 | 29.9 |
| TraesCS3B01G471400.1 | Wheat | endoplasmic reticulum | 28.24 | 29.48 |
| Zm00001d011975_P002 | Maize | nucleus | 28.05 | 28.82 |
| HORVU3Hr1G095520.4 | Barley | cytosol, nucleus | 17.94 | 25.54 |
| Zm00001d042291_P002 | Maize | mitochondrion, nucleus | 19.27 | 22.8 |
Protein Annotations
| Gene3D:1.25.40.90 | EntrezGene:100249768 | wikigene:100249768 | MapMan:35.2 | ProteinID:CCB47000 | ProteinID:CCB47000.1 |
| InterPro:CID_dom | ncoils:Coil | InterPro:ENTH_VHS | UniProt:F6H457 | EMBL:FN595232 | InterPro:IPR006569 |
| InterPro:IPR008942 | EntrezGene:LOC100249768 | wikigene:LOC100249768 | PFAM:PF04818 | PFscan:PS51391 | PANTHER:PTHR12460 |
| PANTHER:PTHR12460:SF9 | InterPro:RNA_pol_II-bd | SMART:SM00582 | SUPFAM:SSF48464 | TIGR:TC57230 | UniParc:UPI0002107E8F |
| ArrayExpress:VIT_14s0068g01560 | EnsemblPlantsGene:VIT_14s0068g01560 | EnsemblPlants:VIT_14s0068g01560.t01 | RefSeq:XP_002272891 | RefSeq:XP_002272891.1 | RefSeq:XP_010660722.1 |
| RefSeq:XP_010660723.1 | RefSeq:XP_019080869.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr14:+:25265814..25273020
Molecular Weight (calculated)
57754.1 Da
IEP (calculated)
6.417
GRAVY (calculated)
-0.547
Length
524 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSTFNPLIL IEKLSKLNSS QQSIETLSHW CIFHMNKAKQ VVETWDRQFH CSPSEQRLAF LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDVMENGDEF
101: GRNAVLRLIG IWEERKVFGS RGQILKEEFG GRQLENSNRN GKHLGFKLKQ SAGNTLEKIV SGYQVIYGGQ LDEDVILRKC TNAISYVEKA DKGIDGGINS
201: AQQNGSGFVE ELQGQHTILR DCIEQLTLVE SSRASLVSNL REALQEQEFK LDQVRNQLQA AQFQAEQAGN MCRRLLKCNN NTQLLAEQSL KETRTTEALL
301: SFVPGTVEQS APVMFTRQVS FPEKPGHIEE DPRKSAAAAV AAKLTASTSS AQMLTFVLSS LASEGVIGNP TKESSGDYPA EKRTKLENDQ SAYTPQNPQP
401: SVSAFPNLDQ LQHNVSTTTQ QSTPSEQPPP PSSPPPLPPM PPMPPYQVPQ YMQAAGSMTN IPYSYGMTQQ QPPSAANYPT VGPPVSSISS FTTPPANSYQ
501: SFQGSEGGFY GQPSSLPMAP ISRR
101: GRNAVLRLIG IWEERKVFGS RGQILKEEFG GRQLENSNRN GKHLGFKLKQ SAGNTLEKIV SGYQVIYGGQ LDEDVILRKC TNAISYVEKA DKGIDGGINS
201: AQQNGSGFVE ELQGQHTILR DCIEQLTLVE SSRASLVSNL REALQEQEFK LDQVRNQLQA AQFQAEQAGN MCRRLLKCNN NTQLLAEQSL KETRTTEALL
301: SFVPGTVEQS APVMFTRQVS FPEKPGHIEE DPRKSAAAAV AAKLTASTSS AQMLTFVLSS LASEGVIGNP TKESSGDYPA EKRTKLENDQ SAYTPQNPQP
401: SVSAFPNLDQ LQHNVSTTTQ QSTPSEQPPP PSSPPPLPPM PPMPPYQVPQ YMQAAGSMTN IPYSYGMTQQ QPPSAANYPT VGPPVSSISS FTTPPANSYQ
501: SFQGSEGGFY GQPSSLPMAP ISRR
001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
Arabidopsis Description
At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.