Factsheet for HORVU3Hr1G095600.3

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G050140.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26990.1	HORVU2Hr1G050140.1	AT3G22960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P15940_001	Banana	cytosol	40.82	29.7
GSMUA_Achr8P17800_001	Banana	cytosol	40.14	29.06
TraesCS3B01G471400.1	Wheat	endoplasmic reticulum	84.35	24.7
TraesCS3D01G429500.1	Wheat	nucleus	72.11	23.09
TraesCS3A01G437300.1	Wheat	nucleus	72.79	22.72
Os01t0925000-02	Rice	nucleus	53.74	16.12
Zm00001d011975_P002	Maize	nucleus	53.06	15.29
EES04124	Sorghum	nucleus	51.7	15.05
CDY20069	Canola	nucleus, plastid	38.78	12.36
Bra039100.1-P	Field mustard	nucleus, plastid	38.1	12.23
AT3G26990.1	Thale cress	nucleus	40.14	11.5
VIT_14s0068g01560.t01	Wine grape	cytosol	40.82	11.45
CDY13671	Canola	nucleus	39.46	11.42
Bra025240.1-P	Field mustard	nucleus	38.78	11.29
VIT_17s0000g00860.t01	Wine grape	nucleus	40.82	11.19
HORVU5Hr1G027930.1	Barley	nucleus	38.78	11.13
KRG94593	Soybean	nucleus	39.46	11.11
KRH06897	Soybean	nucleus	39.46	11.05
PGSC0003DMT400052044	Potato	nucleus	38.1	11.02
Solyc02g094360.2.1	Tomato	nucleus	38.1	10.81
CDY00175	Canola	mitochondrion	38.1	10.59
CDY52407	Canola	plastid	40.82	10.29
HORVU4Hr1G026870.2	Barley	nucleus	34.01	8.55
HORVU0Hr1G010590.1	Barley	cytosol	34.69	8.11
Zm00001d042291_P002	Maize	mitochondrion, nucleus	6.8	2.26
HORVU3Hr1G095520.4	Barley	cytosol, nucleus	2.04	0.82

Protein Annotations

EnsemblPlants:HORVU3Hr1G095600.3	EnsemblPlantsGene:HORVU3Hr1G095600	Gene3D:1.25.40.90	InterPro:CID_dom	InterPro:ENTH_VHS	InterPro:IPR006569
InterPro:IPR008942	InterPro:RNA_pol_II-bd	PANTHER:PTHR12460	PANTHER:PTHR12460:SF4	PFAM:PF04818	PFscan:PS51391
SignalP:SignalP-noTM	SMART:SM00582	SUPFAM:SSF48464	UniParc:UPI000B466010	UniProt:A0A287MDV2	MapMan:35.2

Description

No Description!

Coordinates

chrchr3H:-:650406664..650408187

Molecular Weight (calculated)

17410.2 Da

IEP (calculated)

7.737

GRAVY (calculated)

0.011

Length

147 amino acids

Sequence
(BLAST)

001: MCLCILQICI CYVFWEFFIE QARLHKMSTG FSKEIFAQKL AKLNIAQQSI ETLSHWCIFH HRCCQEVVDT WNRDFHSAPQ ERKISLLYLA NDIMQNSKKD
101: GMRYIHEFLK VIAAALDDLF TNGDDFGRNV VKRLVRETYS CLYYLIL

Best Arabidopsis Sequence Match ( AT3G26990.1 )
(BLAST)

001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ

Arabidopsis Description

At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.