Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G128200.1 | Wheat | nucleus | 91.28 | 91.75 |
| TraesCS4A01G188700.1 | Wheat | nucleus | 91.11 | 91.74 |
| TraesCS4D01G124400.1 | Wheat | nucleus | 90.09 | 90.71 |
| Os11t0130100-01 | Rice | cytosol, nucleus | 54.53 | 67.87 |
| Os12t0126800-01 | Rice | nucleus | 67.35 | 67.35 |
| Zm00001d005012_P002 | Maize | nucleus, plastid | 47.18 | 65.25 |
| EES16544 | Sorghum | nucleus | 64.27 | 63.84 |
| Zm00001d044657_P002 | Maize | nucleus | 63.76 | 63.65 |
| Zm00001d005013_P001 | Maize | nucleus, plastid | 47.86 | 63.06 |
| HORVU0Hr1G010590.1 | Barley | cytosol | 66.15 | 61.53 |
| EES09184 | Sorghum | nucleus | 61.54 | 60.81 |
| Zm00001d052407_P004 | Maize | nucleus | 61.37 | 58.0 |
| Zm00001d023272_P009 | Maize | nucleus | 57.95 | 56.03 |
| GSMUA_Achr11P... | Banana | cytosol | 42.56 | 46.98 |
| GSMUA_Achr4P02300_001 | Banana | nucleus | 42.91 | 45.06 |
| KRG94958 | Soybean | nucleus | 38.63 | 42.88 |
| KRH64929 | Soybean | nucleus | 38.29 | 42.83 |
| KRH57843 | Soybean | mitochondrion | 36.07 | 40.04 |
| HORVU5Hr1G027930.1 | Barley | nucleus | 32.65 | 37.3 |
| Solyc11g012740.1.1 | Tomato | nucleus | 33.33 | 36.79 |
| VIT_08s0056g00770.t01 | Wine grape | cytosol | 39.83 | 34.88 |
| HORVU3Hr1G095600.3 | Barley | extracellular | 8.55 | 34.01 |
| HORVU3Hr1G095520.4 | Barley | cytosol, nucleus | 11.45 | 18.21 |
Protein Annotations
| Gene3D:1.25.40.90 | MapMan:35.2 | EMBL:AK359365 | InterPro:CID_dom | ncoils:Coil | InterPro:ENTH_VHS |
| UniProt:F2D655 | EnsemblPlantsGene:HORVU4Hr1G026870 | EnsemblPlants:HORVU4Hr1G026870.2 | InterPro:IPR006569 | InterPro:IPR008942 | PFAM:PF04818 |
| PFscan:PS51391 | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF9 | InterPro:RNA_pol_II-bd | SMART:SM00582 | SUPFAM:SSF48464 |
| UniParc:UPI00020056B5 | SEG:seg | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D655]
Coordinates
chrchr4H:+:162283118..162313401
Molecular Weight (calculated)
62448.7 Da
IEP (calculated)
7.310
GRAVY (calculated)
-0.485
Length
585 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGTKADAKA DTSGGGGGSF SEKGLAEKLT KLNSSAASIQ TLSHWCVFHR KRARRIVDTW EKQFNNATKD KKVSFLYLSN DILQNSKRKG GEFVNEFWKV
101: LPGSLKDVHD SGGEHGKKVV ARLIGIWDER KVFGTRIESL KVDILGENPP TLDNNDNGSN PSPNPSSNPK AVRKDSSTYI KELTVCGMPE KIVTAYQSVV
201: DQYFDEDAAL NKCKTTVNVL EKMDKDVDNA CTHGIPQASS LVSDLQEQEA VLKNCIEQLE SVDTARTNLI NQLKVALSEQ EAKSELLRTQ LQVARAEAEH
301: AMQLRQRLGG APVTNGAGSS SSPSMVTFTS EQTAAAVQNS EARPISPQFQ PVHQATSPPT MTSAMVDEPK ITAAAMADKL ASLSSGQQVL SSIFSSLAAE
401: QAASINGGSP SGELSSGPPG FDRPKRPRLE QQAGDTGAPP FFAQVPQVQQ QIGAAPTSHG STQSLAQVNQ VPGSFAPPPL QPMVPQLMQQ FSQNTGGPGG
501: MFGMIPFGMM AGSLPPPLPL LPAGFAMPNG PPPPPPLPPM QNHHQQQQSP QAPQQSPTST GFFPTSSTGF FPPVQVQQSP SVQRQ
101: LPGSLKDVHD SGGEHGKKVV ARLIGIWDER KVFGTRIESL KVDILGENPP TLDNNDNGSN PSPNPSSNPK AVRKDSSTYI KELTVCGMPE KIVTAYQSVV
201: DQYFDEDAAL NKCKTTVNVL EKMDKDVDNA CTHGIPQASS LVSDLQEQEA VLKNCIEQLE SVDTARTNLI NQLKVALSEQ EAKSELLRTQ LQVARAEAEH
301: AMQLRQRLGG APVTNGAGSS SSPSMVTFTS EQTAAAVQNS EARPISPQFQ PVHQATSPPT MTSAMVDEPK ITAAAMADKL ASLSSGQQVL SSIFSSLAAE
401: QAASINGGSP SGELSSGPPG FDRPKRPRLE QQAGDTGAPP FFAQVPQVQQ QIGAAPTSHG STQSLAQVNQ VPGSFAPPPL QPMVPQLMQQ FSQNTGGPGG
501: MFGMIPFGMM AGSLPPPLPL LPAGFAMPNG PPPPPPLPPM QNHHQQQQSP QAPQQSPTST GFFPTSSTGF FPPVQVQQSP SVQRQ
001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
Arabidopsis Description
At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.