Factsheet for Zm00001d023272_P009

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

endoplasmic reticulum 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	endoplasmic reticulum, mitochondrion, nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044657_P002	Maize	nucleus	74.88	77.3
EES16544	Sorghum	nucleus	73.06	75.04
TraesCS4B01G128200.1	Wheat	nucleus	56.53	58.76
TraesCS5D01G150900.1	Wheat	nucleus	57.19	58.45
TraesCS4A01G188700.1	Wheat	nucleus	56.03	58.35
HORVU4Hr1G026870.2	Barley	nucleus	56.03	57.95
Zm00001d005012_P002	Maize	nucleus, plastid	40.5	57.92
TraesCS4D01G124400.1	Wheat	nucleus	55.37	57.66
Zm00001d005013_P001	Maize	nucleus, plastid	42.15	57.43
TraesCS5B01G139700.1	Wheat	nucleus	56.36	57.41
TraesCS5A01G141400.1	Wheat	nucleus	56.36	57.41
Os12t0126800-01	Rice	nucleus	55.37	57.27
Os11t0130100-01	Rice	cytosol, nucleus	43.47	55.96
Zm00001d052407_P004	Maize	nucleus	56.03	54.77
HORVU0Hr1G010590.1	Barley	cytosol	55.54	53.42
GSMUA_Achr4P02300_001	Banana	nucleus	40.17	43.63
GSMUA_Achr11P...	Banana	cytosol	38.02	43.4
KRH64929	Soybean	nucleus	33.39	38.62
KRG94958	Soybean	nucleus	33.22	38.14
KRH57843	Soybean	mitochondrion	31.9	36.62
Solyc11g012740.1.1	Tomato	nucleus	31.74	36.23
VIT_08s0056g00770.t01	Wine grape	cytosol	35.87	32.48
Zm00001d002140_P001	Maize	cytosol, endoplasmic reticulum, nucleus	28.43	29.91
Zm00001d011975_P002	Maize	nucleus	20.33	24.12
Zm00001d042291_P002	Maize	mitochondrion, nucleus	14.55	19.86

Protein Annotations

EnsemblPlants:Zm00001d023272_P009	EnsemblPlants:Zm00001d023272_T009	EnsemblPlantsGene:Zm00001d023272	EntrezGene:100382152	Gene3D:1.25.40.90	InterPro:CID_dom
InterPro:ENTH_VHS	InterPro:IPR006569	InterPro:IPR008942	InterPro:RNA_pol_II-bd	ncoils:Coil	PANTHER:PTHR12460
PANTHER:PTHR12460:SF9	PFAM:PF04818	PFscan:PS51391	ProteinID:AQK38816.1	SEG:seg	SMART:SM00582
SUPFAM:SSF48464	UniParc:UPI000844B42E	UniProt:A0A1D6IRC9	MapMan:35.2	:	:

Description

ENTH/VHS family protein

Coordinates

chr10:+:1803867..1810618

Molecular Weight (calculated)

64855.5 Da

IEP (calculated)

8.587

GRAVY (calculated)

-0.317

Length

605 amino acids

Sequence
(BLAST)

001: MAAAKSGVDV ETRDGGGGGS FSEERFVDKL NKLNNTTASI QSILSFPWLH LCVADLLPVT SCSIFLVFLN PCAALSHWCI FHRKRARRIV DTWEKHFSTA
101: TNDKKISFLF LSNDILQNSK RKGGDYVHEF WRVLPRLLKH FYENGGEEAK KLVARLIGIW DDRKVFGTRI ESLKDGIFGD NPPIFDHSGN NNNSNPSSNP
201: LNSKVGRKDS STVLKKLAVG GMPEKIVTAY QSVFDQHFDE DTALNKCKST VSVLENLKKD IDLASTEGDP PASTMISDLQ EQETILKHCI AQLGSVDAAR
301: ISLINQLKEA LTEQESKSEV LRSQLQVARA EAEHAIQLRQ RFGGAVVANG TGSSSSPLLM SPQLQSLNPA PSLAPPIGAA GDEPKRTAAA MADKLASLSA
401: PVQVLSSIFS SFVATHGASL SSMNSGSPPR DQLSGAPPGF QVEKRPRLER TVLASDMGAP PFSMQAPRLQ QPVGSMPTQA ATQMNQAPGL FAPPPPPPLP
501: PLLPPLLQQF GQSAGGMMGM GPFGMMAGSM PPPPPMSSIM PAGFPAPSGP PPPPLPPAQT QPQQQQQSPP QPPAPQQSAG FFQTSAGMGY FPAVQVQQSP
601: SAQRQ

Best Arabidopsis Sequence Match ( AT3G26990.1 )
(BLAST)

001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ

Arabidopsis Description

At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.