Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G128200.1 | Wheat | nucleus | 95.01 | 94.85 |
| TraesCS4A01G188700.1 | Wheat | nucleus | 93.8 | 93.8 |
| HORVU4Hr1G026870.2 | Barley | nucleus | 90.71 | 90.09 |
| TraesCS5D01G150900.1 | Wheat | nucleus | 68.67 | 67.4 |
| Os12t0126800-01 | Rice | nucleus | 67.81 | 67.35 |
| Os11t0130100-01 | Rice | cytosol, nucleus | 54.22 | 67.02 |
| Zm00001d005012_P002 | Maize | nucleus, plastid | 46.3 | 63.59 |
| EES16544 | Sorghum | nucleus | 63.86 | 62.99 |
| Zm00001d044657_P002 | Maize | nucleus | 63.17 | 62.63 |
| Zm00001d005013_P001 | Maize | nucleus, plastid | 46.82 | 61.26 |
| EES09184 | Sorghum | nucleus | 61.45 | 60.3 |
| Zm00001d052407_P004 | Maize | nucleus | 61.79 | 58.0 |
| Zm00001d023272_P009 | Maize | nucleus | 57.66 | 55.37 |
| GSMUA_Achr11P... | Banana | cytosol | 42.17 | 46.23 |
| GSMUA_Achr4P02300_001 | Banana | nucleus | 42.34 | 44.17 |
| KRG94958 | Soybean | nucleus | 37.87 | 41.75 |
| KRH64929 | Soybean | nucleus | 37.35 | 41.49 |
| KRH57843 | Soybean | mitochondrion | 35.8 | 39.47 |
| TraesCS5D01G113800.2 | Wheat | nucleus | 32.7 | 37.11 |
| Solyc11g012740.1.1 | Tomato | nucleus | 33.22 | 36.42 |
| VIT_08s0056g00770.t01 | Wine grape | cytosol | 39.41 | 34.28 |
| TraesCS3D01G429500.1 | Wheat | nucleus | 18.07 | 22.88 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G124400.1 | EnsemblPlantsGene:TraesCS4D01G124400 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 |
| InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF9 | PFAM:PF04818 |
| PFscan:PS51391 | SEG:seg | SMART:SM00582 | SUPFAM:SSF48464 | TIGR:cd03562 | MapMan:35.2 |
Description
No Description!
Coordinates
chr4D:-:108853069..108873475
Molecular Weight (calculated)
62075.6 Da
IEP (calculated)
7.170
GRAVY (calculated)
-0.454
Length
581 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGTKADAKA ETSGGGSFSE KGLAEKLNKL NSSAASIQTL SHWCVFHRKR ARRIVDTWEK QFNNATKDKK VSFLYLSNDI LQNSKRKGGE FVNEFWKVLP
101: GSLKDVHDNG GEHGKKVVAR LIGIWDERKV FGTRIESLKV DILGEKPPTL DNNDNGSNPS PNPSSDPKAA RKDSSTYIKE LTVSGMPEKI ATAYQSVVDQ
201: YFDEDAALNK CRITVNVLEK MDKDVDNACT HGIPQASSLV SDLQEQEAVL KKCIEQLESV DTARINLINQ LKVALSEQEG KSELLRTQLQ VARAEAEHAM
301: QLRQRLGGAP VINCPGSSSG PPMITFPSEQ LTAAMQNSEA SPISPQFQPV HPATSPPTMT VAMGDEPKIT AAAMADKLAS LSSGQQVLSS IFSSLAAEQA
401: ASINGGSSSG ELSAGPPGFD RPKRPRLEQQ ASDTGAAPFF GQLPQVQQQI GAAPTSLGST QSPAQANQVP GSFAPPPLQP MVPQLMQQFS QNTGGPGGMF
501: GMIPFGMMAG SLPPPLPLLP AGFAMPNGPP PPPPLPPIQQ QQQQSPQAPQ QSPTSTGFFP TSSTVFFPPV QVQQSPSVQR Q
101: GSLKDVHDNG GEHGKKVVAR LIGIWDERKV FGTRIESLKV DILGEKPPTL DNNDNGSNPS PNPSSDPKAA RKDSSTYIKE LTVSGMPEKI ATAYQSVVDQ
201: YFDEDAALNK CRITVNVLEK MDKDVDNACT HGIPQASSLV SDLQEQEAVL KKCIEQLESV DTARINLINQ LKVALSEQEG KSELLRTQLQ VARAEAEHAM
301: QLRQRLGGAP VINCPGSSSG PPMITFPSEQ LTAAMQNSEA SPISPQFQPV HPATSPPTMT VAMGDEPKIT AAAMADKLAS LSSGQQVLSS IFSSLAAEQA
401: ASINGGSSSG ELSAGPPGFD RPKRPRLEQQ ASDTGAAPFF GQLPQVQQQI GAAPTSLGST QSPAQANQVP GSFAPPPLQP MVPQLMQQFS QNTGGPGGMF
501: GMIPFGMMAG SLPPPLPLLP AGFAMPNGPP PPPPLPPIQQ QQQQSPQAPQ QSPTSTGFFP TSSTVFFPPV QVQQSPSVQR Q
001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
Arabidopsis Description
At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.