CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044657_P002	Maize	nucleus	85.74	86.18
Zm00001d023272_P009	Maize	nucleus	75.04	73.06
EES09184	Sorghum	nucleus	68.25	67.91
TraesCS4B01G128200.1	Wheat	nucleus	64.52	65.29
Os12t0126800-01	Rice	nucleus	64.69	65.13
Os11t0130100-01	Rice	cytosol, nucleus	51.78	64.89
TraesCS4A01G188700.1	Wheat	nucleus	63.84	64.72
HORVU4Hr1G026870.2	Barley	nucleus	63.84	64.27
TraesCS4D01G124400.1	Wheat	nucleus	62.99	63.86
TraesCS5D01G150900.1	Wheat	nucleus	63.33	63.01
TraesCS5A01G141400.1	Wheat	nucleus	63.5	62.96
TraesCS5B01G139700.1	Wheat	nucleus	62.82	62.29
HORVU0Hr1G010590.1	Barley	cytosol	61.8	57.87
GSMUA_Achr11P...	Banana	cytosol	40.92	45.47
GSMUA_Achr4P02300_001	Banana	nucleus	41.94	44.34
KRG94958	Soybean	nucleus	36.16	40.42
KRH64929	Soybean	nucleus	35.82	40.34
KRH57843	Soybean	mitochondrion	33.96	37.95
Solyc11g012740.1.1	Tomato	nucleus	33.28	36.98
VIT_08s0056g00770.t01	Wine grape	cytosol	38.2	33.68
EES12937	Sorghum	nucleus	29.88	33.4
EES04124	Sorghum	nucleus	21.05	24.55

Protein Annotations

Gene3D:1.25.40.90	MapMan:35.2	UniProt:C5YQP0	InterPro:CID_dom	ncoils:Coil	EnsemblPlants:EES16544
ProteinID:EES16544	ProteinID:EES16544.2	InterPro:ENTH_VHS	InterPro:IPR006569	InterPro:IPR008942	PFAM:PF04818
PFscan:PS51391	PANTHER:PTHR12460	PANTHER:PTHR12460:SF9	InterPro:RNA_pol_II-bd	SMART:SM00582	EnsemblPlantsGene:SORBI_3008G018900
SUPFAM:SSF48464	UniParc:UPI00081AD4EE	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:1542604..1549218

Molecular Weight (calculated)

63000.2 Da

IEP (calculated)

9.672

GRAVY (calculated)

-0.406

Length

589 amino acids

Sequence
(BLAST)

001: MAAAKAGVDL ETRDGGSGGG GGGSFSEERL VDKLNKLNNT AASIQTLSQW CIFHRKRARR VVDTWEKQFS SATEDKKISF LFLSNDILQN SKRKGGDYVH
101: EFWRVLPRSL KHVYKNGGEE GMKLVARLIG IWDERKVFGT RIESLKDNIF GDNPPIFNNN GNKNNSNPSS KPLNSKVARK DSSTVLKKLT VGGMPEKIVT
201: AYQAVLDQHF DEDTALNKCK STVSVLEKIK KNIDDASTKG DQPASTMISD LQEQETILKQ CISQLESVDV ARISLLNQLK EALIEQESKS EILRIQLQVA
301: RAEAEHAIQL RQRFGGAVVA NGTGSSSSLL MITPTEQTAG MIKGSGVRLM SPQLQSLNPA ISLAPTVSAV GDEPKRTAAA MADKLASLSA PVQVLSSIFS
401: SFVAEHGASL SSMNSESPSG ELSGGPPGFK IEKRPRLENT AHGSDMGAPP FPVQVPQMQQ QIGAVPTQLP AQINQAPGPF APPPPPFLPP LLQQFGQSTG
501: GMMGMGPFGM MAGSMPPPPP VSNIMPTGFP GPSGPPPPPP LPPAQNQAQQ QSPQAPQQSP TSAGFFQSSA GMGFFPPVQV QQSPSAQRQ

Best Arabidopsis Sequence Match ( AT5G65180.1 )
(BLAST)

001: MSSPFSEEIL IDNLAKLNST QQSIQTLSQW CIVHRSEAEL VVTTWEKQFH STQIGQKVPL LYLANDILQN SKRQGNEFVQ EFWKVLPGAL KDIVSLGDDY
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS

Arabidopsis Description

ENTH/VHS family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.