Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EES12937 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10060.1 | EES12937 | AT5G10060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G101800.1 | Wheat | nucleus | 77.23 | 79.49 |
| TraesCS5D01G113800.2 | Wheat | nucleus | 76.85 | 79.1 |
| Os04t0636700-01 | Rice | nucleus | 78.94 | 78.79 |
| HORVU5Hr1G027930.1 | Barley | nucleus | 76.28 | 78.52 |
| TraesCS5B01G106400.1 | Wheat | nucleus | 75.9 | 78.12 |
| Zm00001d002140_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 83.87 | 76.87 |
| GSMUA_Achr4P09200_001 | Banana | nucleus | 57.5 | 53.53 |
| GSMUA_Achr8P24850_001 | Banana | cytosol | 54.65 | 52.75 |
| KRG97617 | Soybean | mitochondrion | 32.07 | 51.52 |
| VIT_07s0031g01240.t01 | Wine grape | nucleus | 48.77 | 49.05 |
| KRH43251 | Soybean | nucleus | 44.97 | 46.56 |
| AT5G65180.1 | Thale cress | nucleus | 38.71 | 46.47 |
| Solyc04g054410.2.1 | Tomato | nucleus | 44.78 | 46.0 |
| Bra006045.1-P | Field mustard | nucleus | 40.42 | 45.81 |
| CDX78365 | Canola | nucleus | 40.42 | 45.51 |
| KRH59408 | Soybean | nucleus | 41.18 | 44.93 |
| CDX81155 | Canola | nucleus | 38.71 | 44.06 |
| AT5G10060.1 | Thale cress | nucleus | 39.09 | 43.92 |
| PGSC0003DMT400033300 | Potato | nucleus | 37.95 | 43.76 |
| CDY40076 | Canola | nucleus | 38.14 | 43.23 |
| KRH31254 | Soybean | nucleus | 43.26 | 41.3 |
| EES16544 | Sorghum | nucleus | 33.4 | 29.88 |
| EES09184 | Sorghum | nucleus | 33.21 | 29.56 |
| EES04124 | Sorghum | nucleus | 23.91 | 24.95 |
Protein Annotations
| Gene3D:1.25.40.90 | MapMan:35.2 | EntrezGene:8068447 | UniProt:C5YGS1 | InterPro:CID_dom | ncoils:Coil |
| EnsemblPlants:EES12937 | ProteinID:EES12937 | ProteinID:EES12937.1 | InterPro:ENTH_VHS | InterPro:IPR006569 | InterPro:IPR008942 |
| PFAM:PF04818 | PFscan:PS51391 | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF4 | InterPro:RNA_pol_II-bd | SMART:SM00582 |
| EnsemblPlantsGene:SORBI_3006G233000 | SUPFAM:SSF48464 | unigene:Sbi.18889 | UniParc:UPI0001A877BB | RefSeq:XP_002448609.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr6:-:57521478..57524467
Molecular Weight (calculated)
58297.0 Da
IEP (calculated)
9.141
GRAVY (calculated)
-0.602
Length
527 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSAFSEDIL ADKLAKLNNT QQCIETLSHW CIYHRKNAEQ IVQTWDKQFH SSGKEQMVPF LYLANDILQN SKRNGTEFVE EFWKVLPGAL KNVSENGDDR
101: GKKVASRLVD IWQERRVFGS RAGGIKDVML GAAPLPDLDM TKKRSHSSSI RIVKRDSRSV KLRLGIGGTA ERIVSALHTV LSEQADEDAD LEKCKTSMRR
201: VGKMEKDVNS ACIRAQDPRR EGLCTELKDE EANMKNCIEK LKVVETNRAA VVSELKEALQ EQESELEKVR TQLQLAEAMV HEASNMQRRL KNEPTIPLPK
301: SASSVEPGKV LSNGQVKEQQ KTAAAILADK IAASSNSQQI LQSALSKFAA EEAKNSSEAR SDKRQKTDQL SQVPSVANAA AFVPMPQVVA TAAQQQPQAM
401: LVQQAPMQSQ SPASQPQYNI YQASPQQFVP QPGGVMMGMP YNMSTMAPPP PPPPPQMMNL GRPSPSAPQP QMAVMPQSQP PTPPMLQQQM PMNLAPQMQF
501: ALQPPGIPPF RPLQPPPGMQ YFHPQSQ
101: GKKVASRLVD IWQERRVFGS RAGGIKDVML GAAPLPDLDM TKKRSHSSSI RIVKRDSRSV KLRLGIGGTA ERIVSALHTV LSEQADEDAD LEKCKTSMRR
201: VGKMEKDVNS ACIRAQDPRR EGLCTELKDE EANMKNCIEK LKVVETNRAA VVSELKEALQ EQESELEKVR TQLQLAEAMV HEASNMQRRL KNEPTIPLPK
301: SASSVEPGKV LSNGQVKEQQ KTAAAILADK IAASSNSQQI LQSALSKFAA EEAKNSSEAR SDKRQKTDQL SQVPSVANAA AFVPMPQVVA TAAQQQPQAM
401: LVQQAPMQSQ SPASQPQYNI YQASPQQFVP QPGGVMMGMP YNMSTMAPPP PPPPPQMMNL GRPSPSAPQP QMAVMPQSQP PTPPMLQQQM PMNLAPQMQF
501: ALQPPGIPPF RPLQPPPGMQ YFHPQSQ
001: MSSPFSEEIL IDNLAKLNST QQSIQTLSQW CIVHRSEAEL VVTTWEKQFH STQIGQKVPL LYLANDILQN SKRQGNEFVQ EFWKVLPGAL KDIVSLGDDY
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS
Arabidopsis Description
ENTH/VHS family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJP7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.