Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10060.1 | KRG97617 | AT5G10060.1 | 21798944 |
| AT5G10060.1 | KRH31254 | AT5G10060.1 | 21798944 |
| AT5G10060.1 | KRH43251 | AT5G10060.1 | 21798944 |
| AT5G10060.1 | KRH59408 | AT5G10060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH59408 | Soybean | nucleus | 86.84 | 91.51 |
| VIT_07s0031g01240.t01 | Wine grape | nucleus | 66.6 | 64.69 |
| KRG97617 | Soybean | mitochondrion | 40.47 | 62.8 |
| Solyc04g054410.2.1 | Tomato | nucleus | 56.78 | 56.34 |
| PGSC0003DMT400033300 | Potato | nucleus | 49.31 | 54.92 |
| KRH31254 | Soybean | nucleus | 58.55 | 53.99 |
| AT5G65180.1 | Thale cress | nucleus | 45.78 | 53.08 |
| CDY40076 | Canola | nucleus | 46.17 | 50.54 |
| Bra006045.1-P | Field mustard | nucleus | 45.97 | 50.32 |
| AT5G10060.1 | Thale cress | nucleus | 46.37 | 50.32 |
| CDX78365 | Canola | nucleus | 45.78 | 49.79 |
| CDX81155 | Canola | nucleus | 44.99 | 49.46 |
| GSMUA_Achr4P09200_001 | Banana | nucleus | 53.24 | 47.88 |
| GSMUA_Achr8P24850_001 | Banana | cytosol | 50.1 | 46.7 |
| TraesCS5D01G113800.2 | Wheat | nucleus | 46.56 | 46.29 |
| TraesCS5A01G101800.1 | Wheat | nucleus | 46.37 | 46.09 |
| TraesCS5B01G106400.1 | Wheat | nucleus | 46.17 | 45.9 |
| EES12937 | Sorghum | nucleus | 46.56 | 44.97 |
| HORVU5Hr1G027930.1 | Barley | nucleus | 44.99 | 44.73 |
| Os04t0636700-01 | Rice | nucleus | 45.97 | 44.32 |
| Zm00001d002140_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 45.19 | 40.0 |
| KRH64929 | Soybean | nucleus | 39.1 | 38.05 |
| KRG94958 | Soybean | nucleus | 38.9 | 37.57 |
| KRG94593 | Soybean | nucleus | 35.17 | 34.29 |
| KRH57843 | Soybean | mitochondrion | 34.77 | 33.59 |
| KRH06897 | Soybean | nucleus | 34.38 | 33.33 |
Protein Annotations
| Gene3D:1.25.40.90 | EntrezGene:100795054 | MapMan:35.2 | EMBL:ACUP02004851 | InterPro:CID_dom | ncoils:Coil |
| InterPro:ENTH_VHS | EnsemblPlantsGene:GLYMA_08G139600 | InterPro:IPR006569 | InterPro:IPR008942 | UniProt:K7L6K9 | EnsemblPlants:KRH43251 |
| ProteinID:KRH43251 | ProteinID:KRH43251.1 | ProteinID:KRH43252.1 | PFAM:PF04818 | PFscan:PS51391 | PANTHER:PTHR12460 |
| PANTHER:PTHR12460:SF4 | InterPro:RNA_pol_II-bd | SMART:SM00582 | SUPFAM:SSF48464 | UniParc:UPI0002338898 | SEG:seg |
Description
hypothetical protein
Coordinates
chr8:+:10684122..10689528
Molecular Weight (calculated)
56530.4 Da
IEP (calculated)
8.461
GRAVY (calculated)
-0.447
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSVFSEQIL ADKLSKLNST QQCIETLSHW CIFHRSKAEL VVGTWNKQFH NSEKVQRVPL LYLANDILQN SRRKGNEFVT EFWKVLPSAL KDVLEKGDDQ
101: ENRAVFRLVD IWEERRVFGS QAKSLKNVIL GEEAPPQLEF NKKRSRSVRI VKKDSRSIKT KLSIGGTAEK IVSAFHTVLN EHSNEDAEMS RCKSAVHRVR
201: KMEKNVDIAC AVVKDPKRKT LSKELVEEEN ILKECIENLK LVEASRTALV IHLKEALHEQ ESELENVRTQ IQVAQAQVEE ASYMRKRLDD EDSSYKASIS
301: TTSLTDVNTK SEAATKKSAA AIAAEVADKL TASTSSQLIM TSVLSTFAAE EAKSACLTSE SMSKPEKSIP ISDPNVFVSS QQLIATPNHS YPSVLVPQPT
401: LQNPAAASQG QYQMLCNSSS QHYLQSTGGV ISSYGYGSIT PLPPGPLPPH MVGPVVPLTH QAMQITQQQP TPIAQHQPIK MTQQAPAPPS FRPLQPPGMV
501: YYGNHQHSI
101: ENRAVFRLVD IWEERRVFGS QAKSLKNVIL GEEAPPQLEF NKKRSRSVRI VKKDSRSIKT KLSIGGTAEK IVSAFHTVLN EHSNEDAEMS RCKSAVHRVR
201: KMEKNVDIAC AVVKDPKRKT LSKELVEEEN ILKECIENLK LVEASRTALV IHLKEALHEQ ESELENVRTQ IQVAQAQVEE ASYMRKRLDD EDSSYKASIS
301: TTSLTDVNTK SEAATKKSAA AIAAEVADKL TASTSSQLIM TSVLSTFAAE EAKSACLTSE SMSKPEKSIP ISDPNVFVSS QQLIATPNHS YPSVLVPQPT
401: LQNPAAASQG QYQMLCNSSS QHYLQSTGGV ISSYGYGSIT PLPPGPLPPH MVGPVVPLTH QAMQITQQQP TPIAQHQPIK MTQQAPAPPS FRPLQPPGMV
501: YYGNHQHSI
001: MSSVFSDQIL IDKLAKLNSS QQSIETLSHW CIFNRSKAEL IVTTWEKQFH STEMDQKVPL LYLANDILQN SKRQGNEFVQ EFWNVLPKAL KDIVSQGDDN
101: GKSAVARVIK IWEERRVFGS RSKSLKDVML GEDVPLPLDI SKKRPRGSKS SKRESKSSRT KLASSGGVAE KIASAYHLVV AENSNEEAEM NKCKSAVKRI
201: RKMEKDVEEA CSTAKDNPKR KSLAKELEEE EYLLRQCIEK LKSVQGSRSS LVNQLKDALR EQESELDNLK AQIQVAKEQT EEAQNMQKRL NDEDYTSKQT
301: TAATTITETN DNTKSGQASK MTPASIAAML TASTSSHMIM QSVLSSFAAE ATKTSGLSKS ESTVPVSDTN ASFPSYNNSQ NQTPTTQGQY HVIPNPPPPQ
401: FLKPPVMNNP YAFGNIPLMP PGLPPPPPPP HLIGNQQPQI PQSNSAQQSQ QGPTFQPPGI MYYGAPHHS
101: GKSAVARVIK IWEERRVFGS RSKSLKDVML GEDVPLPLDI SKKRPRGSKS SKRESKSSRT KLASSGGVAE KIASAYHLVV AENSNEEAEM NKCKSAVKRI
201: RKMEKDVEEA CSTAKDNPKR KSLAKELEEE EYLLRQCIEK LKSVQGSRSS LVNQLKDALR EQESELDNLK AQIQVAKEQT EEAQNMQKRL NDEDYTSKQT
301: TAATTITETN DNTKSGQASK MTPASIAAML TASTSSHMIM QSVLSSFAAE ATKTSGLSKS ESTVPVSDTN ASFPSYNNSQ NQTPTTQGQY HVIPNPPPPQ
401: FLKPPVMNNP YAFGNIPLMP PGLPPPPPPP HLIGNQQPQI PQSNSAQQSQ QGPTFQPPGI MYYGAPHHS
Arabidopsis Description
At5g10060 [Source:UniProtKB/TrEMBL;Acc:Q8GUK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.