Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os04t0636700-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10060.1 | Os04t0636700-01 | AT5G10060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G101800.1 | Wheat | nucleus | 78.98 | 81.45 |
| TraesCS5D01G113800.2 | Wheat | nucleus | 78.79 | 81.25 |
| TraesCS5B01G106400.1 | Wheat | nucleus | 77.27 | 79.69 |
| HORVU5Hr1G027930.1 | Barley | nucleus | 77.27 | 79.69 |
| EES12937 | Sorghum | nucleus | 78.79 | 78.94 |
| Zm00001d002140_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 73.3 | 67.3 |
| GSMUA_Achr4P09200_001 | Banana | nucleus | 58.33 | 54.42 |
| GSMUA_Achr8P24850_001 | Banana | cytosol | 53.98 | 52.2 |
| KRG97617 | Soybean | mitochondrion | 30.87 | 49.7 |
| VIT_07s0031g01240.t01 | Wine grape | nucleus | 46.59 | 46.95 |
| AT5G65180.1 | Thale cress | nucleus | 38.45 | 46.24 |
| Solyc04g054410.2.1 | Tomato | nucleus | 44.89 | 46.2 |
| KRH43251 | Soybean | nucleus | 44.32 | 45.97 |
| KRH59408 | Soybean | nucleus | 41.29 | 45.13 |
| Bra006045.1-P | Field mustard | nucleus | 39.39 | 44.73 |
| CDX81155 | Canola | nucleus | 39.2 | 44.71 |
| CDX78365 | Canola | nucleus | 39.39 | 44.44 |
| CDY40076 | Canola | nucleus | 39.02 | 44.3 |
| PGSC0003DMT400033300 | Potato | nucleus | 37.5 | 43.33 |
| AT5G10060.1 | Thale cress | nucleus | 38.07 | 42.86 |
| KRH31254 | Soybean | nucleus | 43.18 | 41.3 |
| Os12t0126800-01 | Rice | nucleus | 36.17 | 32.65 |
| Os11t0130100-01 | Rice | cytosol, nucleus | 25.76 | 28.94 |
| Os01t0925000-02 | Rice | nucleus | 23.67 | 25.51 |
Protein Annotations
| EnsemblPlants:Os04t0636700-01 | EnsemblPlantsGene:Os04g0636700 | EntrezGene:4337145 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS |
| InterPro:IPR006569 | InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF4 |
| PFAM:PF04818 | PFscan:PS51391 | ProteinID:BAS91222.1 | RefSeq:XP_015633553.1 | SEG:seg | SMART:SM00582 |
| SUPFAM:SSF48464 | UniParc:UPI00018F094E | UniProt:A0A0P0WFI1 | MapMan:35.2 | : | : |
Description
Similar to 117M18_7. (Os04t0636700-01);Hypothetical conserved gene. (Os04t0636700-02)
Coordinates
chr4:-:32378971..32382044
Molecular Weight (calculated)
58409.0 Da
IEP (calculated)
8.142
GRAVY (calculated)
-0.625
Length
528 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNSAFSEEI LAEKLAKLNN TQQCIETLSH WCIYHRKNAE QIVQTWAKQF HSSGNEQKTP FLYLANDILQ NSKRNGTEFV EEFWKVLPGA LKDVTENGDE
101: RGKKVVSRLV EIWQERRVFG SRAGGIKDVM LGTVPLPVLD MTKKRSHGSS IKIVKRDSRS VKLRLGVGGT AEKIVSALHT VLSEQADEDS DLEKCKTSMR
201: RVGKMQKDVS SACSKGDDPR RETLCTELKE EEDSMTECIE KLKVVEANRA TVVSELKEAL QEQESELEKV RTQLQLAEAM VEEAADMQRK LKNEPVIPSS
301: KHLSSVEPGK PLSNGQAKDQ QKTAAAILAD KIAASSNSQQ ILQSALSKFA AEEAKNSSET HQDKRLKIEH SSQVPSVANA AAFVPMPQMT TTTAQQPQAI
401: LVQQTPMQNQ PPAPQPQYNI YQAPPHQFVQ QPGGVMMGMA YNMSTMAPPP PPPPQMMNLA RPSPSTPQPP MGIMPQTQPP PPAPTMLQQQ MPMNVGPPMQ
501: FALQQSGAPS FRPLQPPPGM QFFHPQSQ
101: RGKKVVSRLV EIWQERRVFG SRAGGIKDVM LGTVPLPVLD MTKKRSHGSS IKIVKRDSRS VKLRLGVGGT AEKIVSALHT VLSEQADEDS DLEKCKTSMR
201: RVGKMQKDVS SACSKGDDPR RETLCTELKE EEDSMTECIE KLKVVEANRA TVVSELKEAL QEQESELEKV RTQLQLAEAM VEEAADMQRK LKNEPVIPSS
301: KHLSSVEPGK PLSNGQAKDQ QKTAAAILAD KIAASSNSQQ ILQSALSKFA AEEAKNSSET HQDKRLKIEH SSQVPSVANA AAFVPMPQMT TTTAQQPQAI
401: LVQQTPMQNQ PPAPQPQYNI YQAPPHQFVQ QPGGVMMGMA YNMSTMAPPP PPPPQMMNLA RPSPSTPQPP MGIMPQTQPP PPAPTMLQQQ MPMNVGPPMQ
501: FALQQSGAPS FRPLQPPPGM QFFHPQSQ
001: MSSPFSEEIL IDNLAKLNST QQSIQTLSQW CIVHRSEAEL VVTTWEKQFH STQIGQKVPL LYLANDILQN SKRQGNEFVQ EFWKVLPGAL KDIVSLGDDY
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS
Arabidopsis Description
ENTH/VHS family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJP7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.