Factsheet for GSMUA_Achr4P09200_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P09200_001
GSMUA_Achr8P24850_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10060.1	GSMUA_Achr4P09200_001	AT5G10060.1	21798944
AT5G10060.1	GSMUA_Achr8P24850_001	AT5G10060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P24850_001	Banana	cytosol	69.43	71.98
Os04t0636700-01	Rice	nucleus	54.42	58.33
EES12937	Sorghum	nucleus	53.53	57.5
TraesCS5D01G113800.2	Wheat	nucleus	51.77	57.23
TraesCS5B01G106400.1	Wheat	nucleus	51.41	56.84
TraesCS5A01G101800.1	Wheat	nucleus	51.41	56.84
HORVU5Hr1G027930.1	Barley	nucleus	51.41	56.84
KRG97617	Soybean	mitochondrion	31.98	55.18
VIT_07s0031g01240.t01	Wine grape	nucleus	50.35	54.39
KRH43251	Soybean	nucleus	47.88	53.24
Solyc04g054410.2.1	Tomato	nucleus	46.82	51.66
Zm00001d002140_P001	Maize	cytosol, endoplasmic reticulum, nucleus	51.77	50.96
KRH59408	Soybean	nucleus	43.29	50.72
AT5G65180.1	Thale cress	nucleus	38.16	49.2
PGSC0003DMT400033300	Potato	nucleus	39.05	48.36
Bra006045.1-P	Field mustard	nucleus	38.87	47.31
GSMUA_Achr8P17800_001	Banana	cytosol	16.96	47.29
CDX81155	Canola	nucleus	38.52	47.08
GSMUA_Achr4P15940_001	Banana	cytosol	16.78	47.03
CDY40076	Canola	nucleus	38.52	46.88
CDX78365	Canola	nucleus	38.16	46.15
AT5G10060.1	Thale cress	nucleus	37.99	45.84
KRH31254	Soybean	nucleus	44.52	45.65
GSMUA_Achr4P02300_001	Banana	nucleus	37.63	38.24
GSMUA_Achr11P...	Banana	cytosol	35.69	38.11
GSMUA_Achr11P...	Banana	nucleus	31.27	33.97
GSMUA_Achr10P...	Banana	nucleus	29.86	32.31

Protein Annotations

EnsemblPlants:GSMUA_Achr4P09200_001	EnsemblPlants:GSMUA_Achr4T09200_001	EnsemblPlantsGene:GSMUA_Achr4G09200_001	Gene3D:1.25.40.90	InterPro:CID_dom	InterPro:ENTH_VHS
InterPro:IPR006569	InterPro:IPR008942	InterPro:RNA_pol_II-bd	ncoils:Coil	PANTHER:PTHR12460	PANTHER:PTHR12460:SF4
PFAM:PF04818	PFscan:PS51391	SEG:seg	SMART:SM00582	SUPFAM:SSF48464	UniParc:UPI0002955FF5
UniProt:M0SMD7	MapMan:35.2	:	:	:	:

Description

protein of unknown function, DUF618 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G09200_001]

Coordinates

chr4:+:6687229..6691551

Molecular Weight (calculated)

62657.7 Da

IEP (calculated)

8.869

GRAVY (calculated)

-0.569

Length

566 amino acids

Sequence
(BLAST)

001: MNSVFHEQIL ADKLSKLNST QQCIETLSHW CIFHRKHAEQ VIQTWDKQFH GSQKEQKVPF LYLANDILQN SKRTGTEFVS EFWKVLPAAL KDVLENGDEH
101: GKNVVSRLVD IWEQRRVFGS RARGLKELML GSEPPPTLEL NKKRSRSSVK IIRRDSRSVK IKLSVGGTAE KIVTALHNVL SEHSSEELDL NKCKAAVRHV
201: GKLEKDIESA CNHEGDPRRE SLANELQVEE ATLNECVEKL KLIEANRAAL VTHLKEALSE QESDLENVRT QLQVSRPSLY NNSSMASRNS DDSWKPALAN
301: LAQAMVDEAA NMQRRLNNEP VVMTTKPPST TEPRKPVLNS PPDKDPKKTA AAIAAEVADK LAASTHSQQI MTSVLSTFAA EEAKNAGLAA STTTTSNSFS
401: AAPPDRRIKA EKPLPISDTT ATAFIPVQPI VVPTPHQAQA VLLQQNPVQS QASAPQTQYS MYPVSTQQYL QHPGGVMIGL PYTYSALPPP PPPQPQMINM
501: GRPSPSAQQQ QPMALIQQPP PPPPLTMNQP MQITQQPPKF ALQQPAPPSY RPLQQPGITF YHAQTQ

Best Arabidopsis Sequence Match ( AT5G65180.1 )
(BLAST)

001: MSSPFSEEIL IDNLAKLNST QQSIQTLSQW CIVHRSEAEL VVTTWEKQFH STQIGQKVPL LYLANDILQN SKRQGNEFVQ EFWKVLPGAL KDIVSLGDDY
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS

Arabidopsis Description

ENTH/VHS family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.