Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10060.1 | CDX78365 | AT5G10060.1 | 21798944 |
| AT5G10060.1 | CDX81155 | AT5G10060.1 | 21798944 |
| AT5G10060.1 | CDY40076 | AT5G10060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81155 | Canola | nucleus | 82.58 | 82.94 |
| CDX78365 | Canola | nucleus | 80.0 | 79.49 |
| AT5G10060.1 | Thale cress | nucleus | 74.19 | 73.56 |
| KRG97617 | Soybean | mitochondrion | 34.41 | 48.78 |
| VIT_07s0031g01240.t01 | Wine grape | nucleus | 54.41 | 48.28 |
| Solyc04g054410.2.1 | Tomato | nucleus | 51.18 | 46.39 |
| KRH43251 | Soybean | nucleus | 50.54 | 46.17 |
| KRH59408 | Soybean | nucleus | 46.67 | 44.93 |
| PGSC0003DMT400033300 | Potato | nucleus | 43.66 | 44.42 |
| KRH31254 | Soybean | nucleus | 49.46 | 41.67 |
| GSMUA_Achr8P24850_001 | Banana | cytosol | 47.1 | 40.11 |
| Os04t0636700-01 | Rice | nucleus | 44.3 | 39.02 |
| TraesCS5A01G101800.1 | Wheat | nucleus | 42.8 | 38.87 |
| TraesCS5D01G113800.2 | Wheat | nucleus | 42.58 | 38.67 |
| TraesCS5B01G106400.1 | Wheat | nucleus | 42.58 | 38.67 |
| GSMUA_Achr4P09200_001 | Banana | nucleus | 46.88 | 38.52 |
| EES12937 | Sorghum | nucleus | 43.23 | 38.14 |
| HORVU5Hr1G027930.1 | Barley | nucleus | 41.94 | 38.09 |
| Zm00001d002140_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 43.44 | 35.13 |
| CDY20069 | Canola | nucleus, plastid | 30.11 | 30.37 |
| CDY13671 | Canola | nucleus | 31.4 | 28.74 |
| CDY00175 | Canola | mitochondrion | 30.32 | 26.65 |
| CDY52407 | Canola | plastid | 31.83 | 25.39 |
Protein Annotations
| EnsemblPlants:CDY40076 | EnsemblPlantsGene:GSBRNA2T00068985001 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 |
| InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF4 | PFAM:PF04818 |
| PFscan:PS51391 | ProteinID:CDY40076 | ProteinID:CDY40076.1 | SEG:seg | SMART:SM00582 | SUPFAM:SSF48464 |
| UniParc:UPI0004EF0010 | UniProt:A0A078HQZ8 | MapMan:35.2 | : | : | : |
Description
BnaC02g00540DBnaC02g00540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQZ8]
Coordinates
chrLK032463:-:81114..83948
Molecular Weight (calculated)
51497.1 Da
IEP (calculated)
9.040
GRAVY (calculated)
-0.706
Length
465 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTVFSEEIL IDKLAKLNST QQSIETLSHW CIFNRVKAEL IVTTWEKQFH STEMAQKVPL LYLANDILQN SKRQGNEFVQ EFWNVLPKAV KDIVSQGDDR
101: GKGVVSRLVK IWEDRKVFGS RSKNLRDVIL GEDCPLPLDV SKKRPRGSKS SKRDSKSSRT KVSSGGVAEK ISSAYHLVVA ENSNEEAEMS KCKSAVKRIR
201: KMEKDVEEAC STGKDNPKRK SLAKELEEEE YLLRQCVEKL KSVQGSRTSL VNQLKDALRE QESELENLEA QIQVAQEQTE EAQKMQKRLK DEDYVSKPPT
301: IAPGSVSATE TTDNNNSTKS GQASKMTPAS IAAMLTASTS SHMIMQSVLS SFAAEATKTS GLSKPESTVP VSYNNPQNQP PTTQSQYHLI SNPAAPPPPQ
401: FLKQPVMNNP YGFGNIPLMP PGLPPPPPPP HMQQPQIPQS NSAQPQQGST FQPPGIMYYG APHHS
101: GKGVVSRLVK IWEDRKVFGS RSKNLRDVIL GEDCPLPLDV SKKRPRGSKS SKRDSKSSRT KVSSGGVAEK ISSAYHLVVA ENSNEEAEMS KCKSAVKRIR
201: KMEKDVEEAC STGKDNPKRK SLAKELEEEE YLLRQCVEKL KSVQGSRTSL VNQLKDALRE QESELENLEA QIQVAQEQTE EAQKMQKRLK DEDYVSKPPT
301: IAPGSVSATE TTDNNNSTKS GQASKMTPAS IAAMLTASTS SHMIMQSVLS SFAAEATKTS GLSKPESTVP VSYNNPQNQP PTTQSQYHLI SNPAAPPPPQ
401: FLKQPVMNNP YGFGNIPLMP PGLPPPPPPP HMQQPQIPQS NSAQPQQGST FQPPGIMYYG APHHS
001: MSSVFSDQIL IDKLAKLNSS QQSIETLSHW CIFNRSKAEL IVTTWEKQFH STEMDQKVPL LYLANDILQN SKRQGNEFVQ EFWNVLPKAL KDIVSQGDDN
101: GKSAVARVIK IWEERRVFGS RSKSLKDVML GEDVPLPLDI SKKRPRGSKS SKRESKSSRT KLASSGGVAE KIASAYHLVV AENSNEEAEM NKCKSAVKRI
201: RKMEKDVEEA CSTAKDNPKR KSLAKELEEE EYLLRQCIEK LKSVQGSRSS LVNQLKDALR EQESELDNLK AQIQVAKEQT EEAQNMQKRL NDEDYTSKQT
301: TAATTITETN DNTKSGQASK MTPASIAAML TASTSSHMIM QSVLSSFAAE ATKTSGLSKS ESTVPVSDTN ASFPSYNNSQ NQTPTTQGQY HVIPNPPPPQ
401: FLKPPVMNNP YAFGNIPLMP PGLPPPPPPP HLIGNQQPQI PQSNSAQQSQ QGPTFQPPGI MYYGAPHHS
101: GKSAVARVIK IWEERRVFGS RSKSLKDVML GEDVPLPLDI SKKRPRGSKS SKRESKSSRT KLASSGGVAE KIASAYHLVV AENSNEEAEM NKCKSAVKRI
201: RKMEKDVEEA CSTAKDNPKR KSLAKELEEE EYLLRQCIEK LKSVQGSRSS LVNQLKDALR EQESELDNLK AQIQVAKEQT EEAQNMQKRL NDEDYTSKQT
301: TAATTITETN DNTKSGQASK MTPASIAAML TASTSSHMIM QSVLSSFAAE ATKTSGLSKS ESTVPVSDTN ASFPSYNNSQ NQTPTTQGQY HVIPNPPPPQ
401: FLKPPVMNNP YAFGNIPLMP PGLPPPPPPP HLIGNQQPQI PQSNSAQQSQ QGPTFQPPGI MYYGAPHHS
Arabidopsis Description
At5g10060 [Source:UniProtKB/TrEMBL;Acc:Q8GUK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.