Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G188700.1 | Wheat | nucleus | 97.42 | 97.59 |
| TraesCS4D01G124400.1 | Wheat | nucleus | 94.85 | 95.01 |
| HORVU4Hr1G026870.2 | Barley | nucleus | 91.75 | 91.28 |
| Os12t0126800-01 | Rice | nucleus | 68.9 | 68.55 |
| Os11t0130100-01 | Rice | cytosol, nucleus | 54.98 | 68.09 |
| TraesCS5B01G139700.1 | Wheat | nucleus | 67.87 | 66.5 |
| Zm00001d005012_P002 | Maize | nucleus, plastid | 47.42 | 65.25 |
| EES16544 | Sorghum | nucleus | 65.29 | 64.52 |
| Zm00001d044657_P002 | Maize | nucleus | 64.95 | 64.51 |
| Zm00001d005013_P001 | Maize | nucleus, plastid | 47.94 | 62.84 |
| EES09184 | Sorghum | nucleus | 62.71 | 61.66 |
| Zm00001d052407_P004 | Maize | nucleus | 61.68 | 58.0 |
| Zm00001d023272_P009 | Maize | nucleus | 58.76 | 56.53 |
| GSMUA_Achr11P... | Banana | cytosol | 42.27 | 46.42 |
| GSMUA_Achr4P02300_001 | Banana | nucleus | 42.44 | 44.34 |
| KRH64929 | Soybean | nucleus | 37.97 | 42.26 |
| KRG94958 | Soybean | nucleus | 38.14 | 42.13 |
| KRH57843 | Soybean | mitochondrion | 35.57 | 39.28 |
| TraesCS5B01G106400.1 | Wheat | nucleus | 33.51 | 38.09 |
| Solyc11g012740.1.1 | Tomato | nucleus | 33.51 | 36.79 |
| VIT_08s0056g00770.t01 | Wine grape | cytosol | 39.86 | 34.73 |
| TraesCS3B01G471400.1 | Wheat | endoplasmic reticulum | 19.07 | 22.11 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G128200.1 | EnsemblPlantsGene:TraesCS4B01G128200 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 |
| InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF9 | PFAM:PF04818 |
| PFscan:PS51391 | SEG:seg | SMART:SM00582 | SUPFAM:SSF48464 | TIGR:cd03562 | MapMan:35.2 |
Description
No Description!
Coordinates
chr4B:+:167922220..167940714
Molecular Weight (calculated)
62080.3 Da
IEP (calculated)
7.185
GRAVY (calculated)
-0.510
Length
582 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGTKADAKA ETSGGGGSFS EKGLAEKLNK LNSSAASIQT LSHWCVFHRK RARRIVDTWE KQFNNATKDK KVSFLYLSND ILQNSKRKGG EFVNEFWKVL
101: PGSLKDVHDN GGEHGKKVVA RLIGIWDERK VFGTRIESLK VDILGENPPT LDNNDNGSNP SPNPSSDPKA ARKDSSTYIK ELTVSGMPEK IATAYQSVVD
201: QYFDEDASLN KCKTTVNVLE KMDKDVDNAC THGIPQASSL VSDLQEQEAV LKKCIEQLES VDRARINLIN QLKVALSEQE GKSELLRTQL QVARAEAEHA
301: MQLRQRLGGA PVTNGPGSSS GPPMITFPSE QTTAAMQNSE ASPISPQFQP VHPATSPPTM TSAMGDEPKI TAAAMADKLA SLSSGQQVLS SIFSSLAAEQ
401: AASINGGSSS GELSAGPPGF DRPKRPRLEQ QAGDTGAPPF FAQVPQVQQQ IGAVPTSLGS TQSPAQANQV PGSFAPPPLQ PMVPQLMQQF SQNTGGPGGM
501: FGMIPFGMMA GSLPPPLPLL PAGFAMPNGP PPPPPLPPIQ QQQQQSPQAP QQSPTSTGFF QTSSTGFFPP VQVQQSPSVQ RQ
101: PGSLKDVHDN GGEHGKKVVA RLIGIWDERK VFGTRIESLK VDILGENPPT LDNNDNGSNP SPNPSSDPKA ARKDSSTYIK ELTVSGMPEK IATAYQSVVD
201: QYFDEDASLN KCKTTVNVLE KMDKDVDNAC THGIPQASSL VSDLQEQEAV LKKCIEQLES VDRARINLIN QLKVALSEQE GKSELLRTQL QVARAEAEHA
301: MQLRQRLGGA PVTNGPGSSS GPPMITFPSE QTTAAMQNSE ASPISPQFQP VHPATSPPTM TSAMGDEPKI TAAAMADKLA SLSSGQQVLS SIFSSLAAEQ
401: AASINGGSSS GELSAGPPGF DRPKRPRLEQ QAGDTGAPPF FAQVPQVQQQ IGAVPTSLGS TQSPAQANQV PGSFAPPPLQ PMVPQLMQQF SQNTGGPGGM
501: FGMIPFGMMA GSLPPPLPLL PAGFAMPNGP PPPPPLPPIQ QQQQQSPQAP QQSPTSTGFF QTSSTGFFPP VQVQQSPSVQ RQ
001: MSSPFSEEIL IDNLAKLNST QQSIQTLSQW CIVHRSEAEL VVTTWEKQFH STQIGQKVPL LYLANDILQN SKRQGNEFVQ EFWKVLPGAL KDIVSLGDDY
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS
101: GKGVVSRLVN IWEERRVFGS RSKSLKDVML SEEAPPPLDV SKKRFRGSKS AKRDSKSTKT KLSSGGVSEK IVSAFNLVRA ENSNEETEMN KCKSAVRRIR
201: KMEKDVEDAC STAKDPRKES LAKELEEEEN ILRQSVEKLK SVEESRTSLV NHLREALREQ ESELENLQSQ IQVAQEQTEE AQNMQKRLNN ETPVNNNNGT
301: SGQSAKITPA SIAAMAEMLT SSTNSSMIMH SVLSSFAAEA TQTSGLTKSN TSDTNAFVVP PNPQQYHIIP NPAASQQFPY GFGNIPLMPP GALPPPPPGT
401: LPPHMMNNNN QPNAAQQQAQ QGQSFHPPGM MYFGPPHHS
Arabidopsis Description
ENTH/VHS family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJP7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.