Factsheet for HORVU3Hr1G095520.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G050140.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26990.1	HORVU2Hr1G050140.1	AT3G22960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0925000-02	Rice	nucleus	50.27	37.76
Zm00001d042291_P002	Maize	mitochondrion, nucleus	44.02	36.57
Zm00001d011975_P002	Maize	nucleus	44.02	31.76
EES04124	Sorghum	nucleus	43.21	31.49
VIT_14s0068g01560.t01	Wine grape	cytosol	25.54	17.94
VIT_17s0000g00860.t01	Wine grape	nucleus	25.27	17.35
KRG94593	Soybean	nucleus	23.91	16.86
GSMUA_Achr4P15940_001	Banana	cytosol	8.97	16.34
KRH06897	Soybean	nucleus	23.1	16.19
Bra039100.1-P	Field mustard	nucleus, plastid	20.11	16.16
PGSC0003DMT400052044	Potato	nucleus	22.28	16.14
CDY20069	Canola	nucleus, plastid	19.84	15.84
AT3G26990.1	Thale cress	nucleus	21.74	15.59
Solyc02g094360.2.1	Tomato	nucleus	21.74	15.44
GSMUA_Achr8P17800_001	Banana	cytosol	8.15	14.78
CDY00175	Canola	mitochondrion	20.92	14.56
CDY13671	Canola	nucleus	19.84	14.37
Bra025240.1-P	Field mustard	nucleus	19.57	14.26
CDY52407	Canola	plastid	20.11	12.69
HORVU5Hr1G027930.1	Barley	nucleus	16.85	12.11
HORVU0Hr1G010590.1	Barley	cytosol	19.84	11.61
HORVU4Hr1G026870.2	Barley	nucleus	18.21	11.45
HORVU3Hr1G095600.3	Barley	extracellular	0.82	2.04

Protein Annotations

EnsemblPlants:HORVU3Hr1G095520.4	EnsemblPlantsGene:HORVU3Hr1G095520	ncoils:Coil	PANTHER:PTHR12460	PANTHER:PTHR12460:SF9	PRINTS:PR01217
SEG:seg	UniParc:UPI000B462AC0	UniProt:A0A287MDT7	MapMan:35.2	:	:

Description

No Description!

Coordinates

chrchr3H:+:650275916..650278652

Molecular Weight (calculated)

40815.4 Da

IEP (calculated)

6.593

GRAVY (calculated)

-0.752

Length

368 amino acids

Sequence
(BLAST)

001: VDIWEDRKLF GTQGQLLKEE YTHKFKELKS KKTGGELVEK VILSYKHMLR APVDEAKLMR ECNSALSFVD NLNKEYGSSY LGSSNGYSFV EELKQQHSIL
101: RNTIEQFKMS ESLRAALLSD LKEALHEQEF KTELVRHQLR VAAQGRYRKA DELCQKLGID VPRHEPSNGS ENSSLSEVPA TFPPVLANAN SIEKGRSTAV
201: RYSREGDAGE HETLNGGFSS RATRDNFERK TEEHSPGTKR QKIENGISVP QPESLPLPPP PPFPHPDTFE QPPPPPQYPP SPESSPPPLP PSMPPPIPPP
301: PPSTDAFMPV PPLPMGGMQY FPPFPPPVNY PMINMPPPFP GAPNPPHPGF LGFGGPFYGP PFPSAPHQ

Best Arabidopsis Sequence Match ( AT3G26990.1 )
(BLAST)

001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ

Arabidopsis Description

At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.