Factsheet for VIT_17s0000g00860.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0179g00350.t01
VIT_05s0020g04480.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26990.1	VIT_00s0179g00350.t01	AT3G22960.1	21798944
AT3G26990.1	VIT_05s0020g04480.t01	AT3G22960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P17800_001	Banana	cytosol	21.83	57.64
GSMUA_Achr4P15940_001	Banana	cytosol	20.34	53.96
VIT_14s0068g01560.t01	Wine grape	cytosol	49.63	50.76
Bra039100.1-P	Field mustard	nucleus, plastid	39.37	46.07
CDY13671	Canola	nucleus	43.66	46.06
CDY20069	Canola	nucleus, plastid	39.37	45.77
Bra025240.1-P	Field mustard	nucleus	43.1	45.74
AT3G26990.1	Thale cress	nucleus	43.66	45.61
GSMUA_Achr11P...	Banana	nucleus	44.22	45.49
GSMUA_Achr10P...	Banana	nucleus	43.66	44.74
HORVU3Hr1G095600.3	Barley	extracellular	11.19	40.82
CDY52407	Canola	plastid	44.22	40.65
CDY00175	Canola	mitochondrion	39.55	40.08
VIT_07s0031g01240.t01	Wine grape	nucleus	30.97	31.68
TraesCS3D01G429500.1	Wheat	nucleus	26.68	31.15
TraesCS3A01G437300.1	Wheat	nucleus	27.24	31.0
VIT_08s0056g00770.t01	Wine grape	cytosol	38.25	30.69
TraesCS3B01G471400.1	Wheat	endoplasmic reticulum	28.36	30.28
Os01t0925000-02	Rice	nucleus	27.24	29.8
EES04124	Sorghum	nucleus	26.31	27.92
Zm00001d011975_P002	Maize	nucleus	25.93	27.25
HORVU3Hr1G095520.4	Barley	cytosol, nucleus	17.35	25.27
Zm00001d042291_P002	Maize	mitochondrion, nucleus	17.16	20.77

Protein Annotations

Gene3D:1.25.40.90	EntrezGene:100250806	wikigene:100250806	MapMan:35.2	ProteinID:CBI15711	ProteinID:CBI15711.3
InterPro:CID_dom	ncoils:Coil	UniProt:D7SH31	InterPro:ENTH_VHS	EMBL:FN594950	InterPro:IPR006569
InterPro:IPR008942	EntrezGene:LOC100250806	wikigene:LOC100250806	PFAM:PF04818	PFscan:PS51391	PANTHER:PTHR12460
PANTHER:PTHR12460:SF9	InterPro:RNA_pol_II-bd	SMART:SM00582	SUPFAM:SSF48464	TIGR:TC64145	UniParc:UPI0001BE0F62
ArrayExpress:VIT_17s0000g00860	EnsemblPlantsGene:VIT_17s0000g00860	EnsemblPlants:VIT_17s0000g00860.t01	unigene:Vvi.13953	RefSeq:XP_002280556	RefSeq:XP_002280556.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:569936..580123

Molecular Weight (calculated)

59541.9 Da

IEP (calculated)

6.286

GRAVY (calculated)

-0.624

Length

536 amino acids

Sequence
(BLAST)

001: MNGIFNEQIL VEKLAKLNSS QKSIETLSHW CIFHRKRAKQ VVETWERQFH CSLREQRLSF LYLANDILQN SRRNGLEFVG EFWKVLPNAL RDVVESGDDF
101: GKNAVLRLIN IWDERKVFGS RGQILKEELM GKTVENNDKN NNNNSYSKNL SFRHVTAVEK IISSYENVYG SPLDEETLLS KCRSAIGCIE KAEKEIGGDY
201: SSGQFNGSKY VEELQGQHDI LTECIEQLRT AESSRASLVS HLKEALQEQE FKLDQVHNQL QVAESQSAHI SSIRQQLLNC NRGHMTAEQR DVNAHAEAPS
301: TFTPETPATG GDKEQSAPVM YTREESFTGK SSSRFEEDPR KSAAAAVAAK LAASTSSAQM LSYVFSSLAS ESADGNPKEE SPDALPFEKR PKLENLPFSY
401: FPPQHSQQPP LPPFPHPDSL QNKATATSQM PPQQPPPQLS PQVSHPDLAM HQAAPPPLPT LPQLATPPFM QTAGSMIGAP YNYTPPLPPP PGFSIPRTPL
501: TAVPYPSPPI PYQNFQGPEG FFSQPPIPAT PPISRS

Best Arabidopsis Sequence Match ( AT3G26990.1 )
(BLAST)

001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ

Arabidopsis Description

At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.