Factsheet for PGSC0003DMT400064073

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007890
PGSC0003DMT400088401

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58070.1	PGSC0003DMT400088401	AT1G54060.1	21798944
AT1G58070.1	PGSC0003DMT400007890	AT1G63120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103700.2.1	Tomato	nucleus	83.82	90.58
VIT_12s0035g00790.t01	Wine grape	nucleus	42.32	48.8
KRH26326	Soybean	cytosol	41.91	43.72
GSMUA_Achr2P20680_001	Banana	nucleus	33.61	37.33
Bra027888.1-P	Field mustard	nucleus	36.51	36.82
AT1G58070.1	Thale cress	nucleus	37.34	31.69
TraesCS4A01G215100.1	Wheat	nucleus	32.78	28.62
HORVU4Hr1G043740.1	Barley	nucleus	32.78	28.52
CDX91607	Canola	cytoskeleton, cytosol, nucleus	24.9	27.91
CDY68194	Canola	cytoskeleton, cytosol, nucleus	24.9	27.91
TraesCS4D01G097600.1	Wheat	nucleus	31.12	27.27
TraesCS4B01G101000.1	Wheat	nucleus	31.12	27.27
EES09471	Sorghum	nucleus, plastid	31.95	24.84
EES16770	Sorghum	nucleus	31.12	24.51
Os11t0195800-01	Rice	nucleus	29.46	24.32
Zm00001d007308_P001	Maize	cytosol, plastid	19.92	24.12
TraesCS5A01G119700.1	Wheat	plastid	27.39	21.64
TraesCS5B01G116200.1	Wheat	plastid	27.39	21.64
HORVU5Hr1G038070.1	Barley	nucleus	26.97	21.04
Os12t0182100-00	Rice	cytosol, plastid	26.97	19.76
Zm00001d053139_P001	Maize	plastid	20.75	16.56

Protein Annotations

EnsemblPlants:PGSC0003DMT400064073	EnsemblPlantsGene:PGSC0003DMG400024897	EntrezGene:102599164	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF11
PGSC:PGSC0003DMG400024897	RefSeq:XP_006349427.2	SEG:seg	UniParc:UPI0002949F14	UniProt:M1CBP0	MapMan:20.2.3.3

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024897]

Coordinates

chr1:+:80421137..80422337

Molecular Weight (calculated)

26767.9 Da

IEP (calculated)

9.768

GRAVY (calculated)

-0.558

Length

241 amino acids

Sequence
(BLAST)

001: MEITPKSSVM DYHSNVDSSR PFRSVKEAVA IFGERFLAKE IYSPKPFTFP TQESPWNTNN YSPTSANSQE IVISATSWKS ASSPSPQDLN DPIVVEALKK
101: LETELEETKA ELKLMKARES ETEIALASLN AELHKNMSKL AHAEAAHAGA MAAAKSVKVN NEDYGYKKKE MRSVKWESSS PTLAEMLTIG ETDLGLLGKK
201: KEKKKTMKKK PIIPLVAELF SRKKRSSTSV DNPLFASSHL F

Best Arabidopsis Sequence Match ( AT1G58070.1 )
(BLAST)

001: MDIEEMEGNN QVEEHHVDTS RPFSSVKEAV AIFGQRIMLP VQTHTMNSKS ASPIAASRSI NQNAKPRSPG LSQTVKLVIP TASPSISQTA KLVSPIASPS
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF

Arabidopsis Description

At1g58070 [Source:UniProtKB/TrEMBL;Acc:Q9C6F8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.