CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	plastid
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94630
EER95642
EER99221
EES11282
EES12241
KXG30464

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58070.1	EES12241	AT1G54060.1	21798944
AT1G58070.1	KXG30464	AT1G54060.1	21798944
AT1G58070.1	EER94630	AT1G63120.1	21798944
AT1G58070.1	EER95642	AT1G63120.1	21798944
AT1G58070.1	EER99221	AT1G63120.1	21798944
AT1G58070.1	EES11282	AT1G63120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G215100.1	Wheat	nucleus	55.48	62.32
TraesCS4D01G097600.1	Wheat	nucleus	54.19	61.09
HORVU4Hr1G043740.1	Barley	nucleus	54.19	60.65
TraesCS4B01G101000.1	Wheat	nucleus	53.55	60.36
Zm00001d007308_P001	Maize	cytosol, plastid	38.71	60.3
Os11t0195800-01	Rice	nucleus	53.87	57.19
Zm00001d053139_P001	Maize	plastid	43.55	44.7
GSMUA_Achr2P20680_001	Banana	nucleus	29.03	41.47
VIT_12s0035g00790.t01	Wine grape	nucleus	24.19	35.89
Solyc01g103700.2.1	Tomato	nucleus	25.48	35.43
KRH26326	Soybean	cytosol	25.48	34.2
EES16770	Sorghum	nucleus	33.55	33.99
PGSC0003DMT400064073	Potato	nucleus	24.84	31.95
Bra027888.1-P	Field mustard	nucleus	23.23	30.13
CDY68194	Canola	cytoskeleton, cytosol, nucleus	18.39	26.51
CDX91607	Canola	cytoskeleton, cytosol, nucleus	18.39	26.51
AT1G58070.1	Thale cress	nucleus	23.55	25.7

Protein Annotations

EnsemblPlants:EES09471	EnsemblPlantsGene:SORBI_3005G072700	EntrezGene:8056277	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0009903	GO:GO:0009904	GO:GO:0009987
GO:GO:0016043	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF11	ProteinID:EES09471	ProteinID:EES09471.1
RefSeq:XP_002450483.1	SEG:seg	UniParc:UPI0001A86800	UniProt:C5Y6S7	MapMan:20.2.3.3	:

Description

hypothetical protein

Coordinates

chr5:-:8734920..8736253

Molecular Weight (calculated)

32258.7 Da

IEP (calculated)

7.767

GRAVY (calculated)

-0.291

Length

310 amino acids

Sequence
(BLAST)

001: MAAAASDRAE VDTARPFRSV KEAVAVFGDR ILVGNGHSRH SSSSASAIAI ATPSASANNA TAGVAATLLS AKHEASSSSS SSTMTFSPTP MAESEEAEIM
101: AATVPMYSAP SSPTSLASTP SPVIKPCSGR GGGDDHRRND NDAASGGLVV VRSIQKLEAD VAETRQEVAQ LRKRGNEMEM ALASLSAQLH RGLSKLAEME
201: ADRAAAAAAA ARRSIGGDTD VASSFTLRSE RWGGDSRLAA SEYLPSFSHA LSLGEVDDVE LMGSRRRKAQ KVKPIVPLIG DILFSSSRRK STKQKGDDGF
301: YSGDLYGVLG

Best Arabidopsis Sequence Match ( AT1G58070.1 )
(BLAST)

001: MDIEEMEGNN QVEEHHVDTS RPFSSVKEAV AIFGQRIMLP VQTHTMNSKS ASPIAASRSI NQNAKPRSPG LSQTVKLVIP TASPSISQTA KLVSPIASPS
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF

Arabidopsis Description

At1g58070 [Source:UniProtKB/TrEMBL;Acc:Q9C6F8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.