Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra014370.1-P | |
| Bra026997.1-P | |
| Bra027622.1-P | |
| Bra030909.1-P | |
| Bra037960.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G58070.1 | Thale cress | nucleus | 74.06 | 62.32 |
| VIT_12s0035g00790.t01 | Wine grape | nucleus | 41.84 | 47.85 |
| KRH26326 | Soybean | cytosol | 39.75 | 41.13 |
| Solyc01g103700.2.1 | Tomato | nucleus | 36.4 | 39.01 |
| PGSC0003DMT400064073 | Potato | nucleus | 36.82 | 36.51 |
| GSMUA_Achr2P20680_001 | Banana | nucleus | 28.87 | 31.8 |
| TraesCS4A01G215100.1 | Wheat | nucleus | 29.29 | 25.36 |
| Os11t0195800-01 | Rice | nucleus | 30.96 | 25.34 |
| TraesCS4D01G097600.1 | Wheat | nucleus | 28.87 | 25.09 |
| TraesCS4B01G101000.1 | Wheat | nucleus | 28.87 | 25.09 |
| HORVU4Hr1G043740.1 | Barley | nucleus | 28.45 | 24.55 |
| EES09471 | Sorghum | nucleus, plastid | 30.13 | 23.23 |
| EES16770 | Sorghum | nucleus | 28.45 | 22.22 |
| Zm00001d007308_P001 | Maize | cytosol, plastid | 17.99 | 21.61 |
| TraesCS5A01G119700.1 | Wheat | plastid | 25.94 | 20.33 |
| TraesCS5B01G116200.1 | Wheat | plastid | 25.94 | 20.33 |
| HORVU5Hr1G038070.1 | Barley | nucleus | 25.1 | 19.42 |
| Os12t0182100-00 | Rice | cytosol, plastid | 24.27 | 17.63 |
| Zm00001d053139_P001 | Maize | plastid | 16.74 | 13.24 |
Protein Annotations
Description
AT1G58070 (E=1e-050) | unknown protein
Coordinates
chrA09:-:9606473..9607192
Molecular Weight (calculated)
26833.3 Da
IEP (calculated)
10.188
GRAVY (calculated)
-0.730
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMEAMEETN QVEQQHVDTS RPFSSVKEAV AIFGQRIMLP GQTHTVNHRP VSPVAASPRI IHTASLPSSP WKQRPSLPSS PQGPREEFMD VLKKLEAEIT
101: ETKTEVRKLK ERESETEVAL ATLNAELHKN MSKMAKAEAD AAGKSAAAMT KSISIKETKE KENGEEERRK ELMRKMAKEY PTLAQILDSN RGDRTGYFVK
201: KKKKKPIVPL LGDFFFLKKK GSSTEISGPL YTTSSTLRF
101: ETKTEVRKLK ERESETEVAL ATLNAELHKN MSKMAKAEAD AAGKSAAAMT KSISIKETKE KENGEEERRK ELMRKMAKEY PTLAQILDSN RGDRTGYFVK
201: KKKKKPIVPL LGDFFFLKKK GSSTEISGPL YTTSSTLRF
001: MDIEEMEGNN QVEEHHVDTS RPFSSVKEAV AIFGQRIMLP VQTHTMNSKS ASPIAASRSI NQNAKPRSPG LSQTVKLVIP TASPSISQTA KLVSPIASPS
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF
Arabidopsis Description
At1g58070 [Source:UniProtKB/TrEMBL;Acc:Q9C6F8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.