Factsheet for VIT_12s0035g00790.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g04130.t01
VIT_09s0002g00720.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58070.1	VIT_09s0002g00720.t01	AT1G54060.1	21798944
AT1G58070.1	VIT_02s0025g04130.t01	AT1G63120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103700.2.1	Tomato	nucleus	49.28	46.19
KRH26326	Soybean	cytosol	49.28	44.59
PGSC0003DMT400064073	Potato	nucleus	48.8	42.32
Bra027888.1-P	Field mustard	nucleus	47.85	41.84
GSMUA_Achr2P20680_001	Banana	nucleus	39.23	37.79
CDX91607	Canola	cytoskeleton, cytosol, nucleus	33.49	32.56
CDY68194	Canola	cytoskeleton, cytosol, nucleus	33.49	32.56
AT1G58070.1	Thale cress	nucleus	44.02	32.39
TraesCS4A01G215100.1	Wheat	nucleus	38.76	29.35
TraesCS4D01G097600.1	Wheat	nucleus	37.8	28.73
TraesCS4B01G101000.1	Wheat	nucleus	37.8	28.73
HORVU4Hr1G043740.1	Barley	nucleus	37.32	28.16
Os11t0195800-01	Rice	nucleus	36.84	26.37
TraesCS5A01G119700.1	Wheat	plastid	35.41	24.26
EES09471	Sorghum	nucleus, plastid	35.89	24.19
Zm00001d007308_P001	Maize	cytosol, plastid	22.97	24.12
TraesCS5B01G116200.1	Wheat	plastid	34.93	23.93
EES16770	Sorghum	nucleus	33.97	23.2
HORVU5Hr1G038070.1	Barley	nucleus	33.49	22.65
Os12t0182100-00	Rice	cytosol, plastid	27.75	17.63
Zm00001d053139_P001	Maize	plastid	22.01	15.23

Protein Annotations

EntrezGene:104881046	MapMan:20.2.3.3	ProteinID:CBI29723	ProteinID:CBI29723.3	ncoils:Coil	UniProt:D7TGV1
EMBL:FN595990	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0008150	GO:GO:0009903	GO:GO:0009904	GO:GO:0009987	GO:GO:0016043	PANTHER:PTHR32054
PANTHER:PTHR32054:SF11	UniParc:UPI0001984631	ArrayExpress:VIT_12s0035g00790	EnsemblPlantsGene:VIT_12s0035g00790	EnsemblPlants:VIT_12s0035g00790.t01	RefSeq:XP_010658002.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:20268074..20268703

Molecular Weight (calculated)

23606.3 Da

IEP (calculated)

10.291

GRAVY (calculated)

-0.799

Length

209 amino acids

Sequence
(BLAST)

001: METPQLSHAP NTNHHSSVDT SRPFRSVKEA VAIFGERLLA GELHSPKPFY HKHESPPRTP QAIIRYDDRE LKDNENGEKH GLVSTVKKLE AELEETKVEL
101: RLLKERESET EVALASLNAE LHKNMSRMAQ AEAAAAAKAV ALRRREGPSP TLAQILSLSE RPGRRNQKER QKKMKKKPII PLVSDLFSWK KGPSTTLHNP
201: LYPASQLYL

Best Arabidopsis Sequence Match ( AT1G58070.1 )
(BLAST)

001: MDIEEMEGNN QVEEHHVDTS RPFSSVKEAV AIFGQRIMLP VQTHTMNSKS ASPIAASRSI NQNAKPRSPG LSQTVKLVIP TASPSISQTA KLVSPIASPS
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF

Arabidopsis Description

At1g58070 [Source:UniProtKB/TrEMBL;Acc:Q9C6F8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.